Construct: ORF ccsbBroadEn_01409

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007891.1_s300c1, BRDN0000386760
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF6 (6049)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6049 RNF6 ring finger protein 6 NM_005977.4 100% 100%
2 human 6049 RNF6 ring finger protein 6 NM_183043.2 100% 100%
3 human 6049 RNF6 ring finger protein 6 NM_183044.2 100% 100%
4 human 6049 RNF6 ring finger protein 6 XM_005266485.3 100% 100%
5 human 6049 RNF6 ring finger protein 6 XM_005266486.2 100% 100%
6 human 6049 RNF6 ring finger protein 6 XM_011535177.3 100% 100%
7 human 6049 RNF6 ring finger protein 6 XM_024449390.1 100% 100%
8 human 6049 RNF6 ring finger protein 6 XM_017020685.2 25.6% 21% 408_409ins704;528_529ins823
9 human 6049 RNF6 ring finger protein 6 XM_017020686.1 25.6% 21% 408_409ins704;528_529ins823
10 human 6049 RNF6 ring finger protein 6 XM_017020687.1 25.6% 21% 408_409ins704;528_529ins823
11 human 6049 RNF6 ring finger protein 6 XM_024449391.1 25.6% 21% 408_409ins704;528_529ins823
12 human 6049 RNF6 ring finger protein 6 XM_024449392.1 25.6% 21% 408_409ins704;528_529ins823
13 human 6049 RNF6 ring finger protein 6 NM_183045.1 20.2% 20% (many diffs)
14 human 6049 RNF6 ring finger protein 6 XM_011535178.2 20.2% 20% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2121
ORF length:
2055
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAA TCAGTCTAGA TCGAGATCAG ATGGTGGCAG TGAAGAAACC TTACCTCAAG
121ACCATAATCA TCATGAAAAT GAGAGAAGAT GGCAGCAAGA GCGTCTCCAC AGAGAAGAGG
181CCTATTATCA GTTTATTAAT GAACTCAATG ATGAAGATTA TCGGCTTATG AGAGACCATA
241ATCTTTTAGG CACCCCTGGA GAAATAACAT CAGAAGAACT GCAACAGCGG TTAGATGGCG
301TCAAGGAACA ACTAGCATCT CAGCCTGACT TGAGAGATGG AACGAATTAC AGAGACTCAG
361AAGTCCCTAG AGAAAGTTCA CATGAAGATT CTCTTCTAGA ATGGTTGAAC ACCTTTCGGC
421GCACAGGAAA TGCAACTCGA AGTGGACAAA ATGGGAACCA AACTTGGAGA GCTGTGAGTC
481GAACAAACCC GAACAATGGA GAGTTTCGGT TTAGTTTGGA AATCCACGTA AATCATGAAA
541ATAGAGGATT TGAAATTCAT GGAGAAGATT ATACAGACAT TCCACTTTCA GATAGTAACA
601GAGATCATAC TGCAAATAGG CAACAAAGGT CAACTAGTCC TGTGGCTAGG CGAACAAGAA
661GCCAAACCTC AGTGAATTTC AATGGTAGTA GTTCCAACAT TCCAAGGACT AGGCTTGCTT
721CAAGGGGGCA AAATCCAGCT GAAGGATCTT TCTCAACATT GGGAAGGTTA AGAAATGGAA
781TTGGGGGAGC AGCTGGCATT CCTCGAGCTA ACGCTTCACG CACTAATTTC AGTAGTCACA
841CAAACCAATC AGGTGGTAGT GAACTCAGGC AAAGGGAGGG GCAACGGTTT GGAGCAGCAC
901ATGTTTGGGA AAATGGGGCT AGAAGTAATG TTACAGTGAG GAATACAAAC CAAAGATTAG
961AGCCAATAAG ATTACGATCT ACTTCCAATA GTCGAAGCCG TTCACCAATT CAGAGACAGA
1021GTGGCACTGT TTATCATAAT TCCCAAAGGG AAAGTAGACC AGTACAGCAA ACCACTAGAA
1081GATCTGTTAG GAGGAGAGGT AGAACTCGAG TCTTTTTAGA GCAAGATAGA GAACGAGAAC
1141GCAGAGGTAC TGCATATACC CCATTCTCTA ATTCAAGGCT TGTGTCAAGA ATAACAGTAG
1201AAGAAGGAGA AGAATCCAGC AGATCCTCAA CTGCTGTACG ACGACATCCA ACAATCACAC
1261TGGACCTTCA AGTGAGAAGG ATCCGTCCTG GAGAAAATAG AGATCGGGAT AGTATTGCAA
1321ATAGAACTCG ATCCAGAGTA GGGCTAGCAG AAAATACAGT CACTATTGAA AGCAATAGTG
1381GGGGCTTTCG CCGAACCATT TCTCGTTTAG AGCGGTCAGG TATTCGAACC TATGTTAGTA
1441CCATAACAGT TCCTCTTCGT AGGATTTCTG AGAATGAGCT TGTTGAGCCA TCATCAGTGG
1501CTCTTCGGTC AATTTTAAGG CAGATCATGA CTGGGTTTGG AGAACTGAGT TCTCTAATGG
1561AGGCCGATTC TGAGTCAGAA CTTCAAAGAA ATGGCCAGCA TTTACCAGAC ATGCACTCAG
1621AACTGAGTAA CTTAGGTACA GATAACAACA GGAGCCAGCA CAGGGAAGGT TCCTCTCAAG
1681ACAGGCAGGC CCAAGGAGAC AGCACTGAAA TGCATGGTGA AAACGAGACC ACCCAGCCTC
1741ATACTCGAAA CAGTGACAGT AGGGGTGGCA GGCAGTTGCG AAATCCAAAC AATTTAGTTG
1801AAACTGGAAC ACTACCCATT CTTCGCCTTG CTCACTTTTT TTTACTAAAT GAAAGTGATG
1861ATGATGATCG AATACGTGGT TTAACCAAAG AGCAGATTGA CAATCTTTCC ACCAGGCACT
1921ATGAGCATAA CAGTATTGAT AGTGAACTAG GTAAAATCTG TAGTGTTTGT ATTAGTGACT
1981ATGTAACTGG AAACAAGCTC AGGCAATTAC CTTGCATGCA TGAATTTCAC ATTCATTGTA
2041TTGACCGATG GCTCTCAGAG AATTGCACTT GTCCGATCTG TCGGCAGCCT GTTTTAGGGT
2101CTAACATAGC AAACAATGGG TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
2161attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)