Construct: ORF ccsbBroadEn_01439
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016433.1_s300c1, BRDN0000396899
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- RPL37A (6168)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6168 | RPL37A | ribosomal protein L37a | NM_000998.5 | 100% | 100% | |
| 2 | mouse | 19981 | Rpl37a | ribosomal protein L37a | NM_009084.4 | 90.5% | 100% | (many diffs) |
| 3 | mouse | 70873 | Cnbd2 | cyclic nucleotide binding d... | XM_017319256.1 | 29.7% | 31.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 342
- ORF length:
- 276
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC CAAACGTACC AAGAAAGTCG GGATCGTCGG TAAATACGGG ACCCGCTATG 121 GGGCCTCCCT CCGGAAAATG GTGAAGAAAA TTGAAATCAG CCAGCACGCC AAGTACACTT 181 GCTCTTTCTG TGGCAAAACC AAGATGAAGA GACGAGCTGT GGGGATCTGG CACTGTGGTT 241 CCTGCATGAA GACAGTGGCT GGCGGTGCCT GGACGTACAA TACCACTTCC GCTGTCACGG 301 TAAAGTCCGC CATCAGAAGA CTGAAGGAGT TGAAAGACCA GTACCCAACT TTCTTGTACA 361 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac