Construct: ORF ccsbBroadEn_01476
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015810.1_s300c1, BRDN0000389393
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- S100A8 (6279)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6279 | S100A8 | S100 calcium binding protei... | NM_001319201.1 | 100% | 100% | |
| 2 | human | 6279 | S100A8 | S100 calcium binding protei... | NM_002964.5 | 100% | 100% | |
| 3 | human | 6279 | S100A8 | S100 calcium binding protei... | NM_001319198.1 | 92% | 92% | 1_24del |
| 4 | human | 6279 | S100A8 | S100 calcium binding protei... | NM_001319197.1 | 80.1% | 80.1% | 1_69del |
| 5 | human | 6279 | S100A8 | S100 calcium binding protei... | NM_001319196.1 | 79.4% | 79.4% | 1_72del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 345
- ORF length:
- 279
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GACCGAGCTG GAGAAAGCCT TGAACTCTAT CATCGACGTC TACCACAAGT 121 ACTCCCTGAT AAAGGGGAAT TTCCATGCCG TCTACAGGGA TGACCTGAAG AAATTGCTAG 181 AGACCGAGTG TCCTCAGTAT ATCAGGAAAA AGGGTGCAGA CGTCTGGTTC AAAGAGTTGG 241 ATATCAACAC TGATGGTGCA GTTAACTTCC AGGAGTTCCT CATTCTGGTG ATAAAGATGG 301 GCGTGGCAGC CCACAAAAAA AGCCATGAAG AAAGCCACAA AGAGTACCCA ACTTTCTTGT 361 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c