Construct: ORF ccsbBroadEn_01494

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006412.1_s300c1, BRDN0000387225
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SCP2 (6342)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6342 SCP2 sterol carrier protein 2 NM_001007098.2 100% 100%
2 human 6342 SCP2 sterol carrier protein 2 NM_001330587.1 87.9% 87.9% 198_329del
3 human 6342 SCP2 sterol carrier protein 2 XM_011541935.2 78.7% 79.4% 198_329del;1082_1083insAGGACATTCCTGC;1086_1197del
4 human 6342 SCP2 sterol carrier protein 2 XM_005271103.4 68.5% 68.6% (many diffs)
5 human 6342 SCP2 sterol carrier protein 2 NM_001193600.2 63.1% 63.2% 950_951insAGGACAT;953T>C;959_1509delinsT
6 human 6342 SCP2 sterol carrier protein 2 NM_001193599.2 59% 57.5% (many diffs)
7 human 6342 SCP2 sterol carrier protein 2 NM_002979.5 58% 58.1% (many diffs)
8 human 6342 SCP2 sterol carrier protein 2 NM_001193617.2 53.4% 50% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1032
ORF length:
966
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGTC CTCTTCCCCG TGGGAGCCTG CGACCCTGCG CCGGGTGTTC GTGGTGGGGG
121TTGGCATGAC CAAGTTTGTG AAGCCTGGAG CTGAGAATTC AAGAGACTAC CCTGACTTGG
181CAGAAGAAGC AGGCAAGAAG GCTTTAGCTG ATGCACAGAT CCCTTATTCA GCAGTGGACC
241AGGCATGTGT TGGCTATGTT TTTGGTGTGG CAGAATGTGT CTTGGCTCTT GGGTTTGAGA
301AGATGAGTAA GGGAAGCCTT GGAATAAAAT TTTCAGATAG AACCATTCCC ACTGATAAGC
361ATGTTGACCT CCTGATCAAT AAGTATGGAT TGTCTGCTCA CCCAGTTGCT CCTCAGATGT
421TTGGGTATGC TGGAAAAGAA CATATGGAAA AATATGGAAC AAAAATTGAA CACTTTGCAA
481AAATTGGATG GAAAAATCAT AAACATTCAG TTAATAACCC GTATTCCCAG TTCCAAGATG
541AATACAGTTT AGATGAAGTG ATGGCATCTA AAGAAGTTTT TGATTTTTTG ACTATCTTAC
601AATGTTGTCC CACTTCAGAT GGTGCTGCAG CAGCAATTTT GGCCAGTGAA GCATTTGTAC
661AGAAGTATGG CCTGCAATCC AAAGCTGTGG AAATTTTGGC ACAAGAAATG ATGACTGATT
721TGCCAAGCTC GTTTGAAGAA AAAAGCATTA TTAAAATGGT TGGCTTTGAT ATGAGTAAAG
781AAGCTGCAAG AAAATGCTAT GAGAAATCTG GCCTGACACC AAATGATATT GACGTAATAG
841AACTTCACGA TTGCTTTTCT ACCAACGAAC TCCTTACTTA TGAAGCACTG GGACTCTGTC
901CAGAAGGACA AGGTGCAACG CTGGTTGATA GAGGAGATAA TACATATGGA GGAAAGTGGG
961TCATAAATCC TAGTGGTGGA CTGATTTCAA AGGGACACCC ACTAGGCGCT ACAGGAGGAC
1021ATTCCTGCTC TTGCCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
1081caatttgttg caacgaac

Download FASTA (ORF) (Full)