Construct: ORF ccsbBroadEn_01512
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005910.1_s300c1, BRDN0000387723
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SDCBP (6386)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6386 | SDCBP | syndecan binding protein | NM_001007067.1 | 100% | 100% | |
| 2 | human | 6386 | SDCBP | syndecan binding protein | NM_005625.4 | 100% | 100% | |
| 3 | human | 6386 | SDCBP | syndecan binding protein | NM_001007069.1 | 99.6% | 99.6% | 239_240insGCA |
| 4 | human | 6386 | SDCBP | syndecan binding protein | NM_001007070.1 | 99.6% | 99.6% | 239_240insGCA |
| 5 | human | 6386 | SDCBP | syndecan binding protein | NM_001007068.1 | 97.9% | 97.9% | 31_32insAGGTAGACAAAGTAATTC |
| 6 | human | 6386 | SDCBP | syndecan binding protein | NM_001348340.1 | 93.7% | 93.7% | 1_60del |
| 7 | human | 6386 | SDCBP | syndecan binding protein | XM_024447230.1 | 93.7% | 93.7% | 1_60del |
| 8 | human | 6386 | SDCBP | syndecan binding protein | NM_001348341.1 | 93.4% | 93.4% | 1_63del |
| 9 | human | 6386 | SDCBP | syndecan binding protein | XM_024447229.1 | 93.4% | 93.4% | 1_63del |
| 10 | human | 6386 | SDCBP | syndecan binding protein | NM_001330537.1 | 93.1% | 93.1% | 1_63del;302_303insGCA |
| 11 | human | 6386 | SDCBP | syndecan binding protein | XM_024447231.1 | 93.1% | 93.1% | 1_63del;302_303insGCA |
| 12 | human | 6386 | SDCBP | syndecan binding protein | NM_001348339.1 | 80.2% | 80.2% | 239_240ins177 |
| 13 | mouse | 53378 | Sdcbp | syndecan binding protein | NM_001098227.1 | 86.6% | 90.3% | (many diffs) |
| 14 | mouse | 53378 | Sdcbp | syndecan binding protein | XM_006538084.3 | 86.6% | 90.3% | (many diffs) |
| 15 | mouse | 53378 | Sdcbp | syndecan binding protein | NM_016807.2 | 86.2% | 89.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 963
- ORF length:
- 894
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCTCTCTAT CCATCTCTCG AAGACTTGAA GGTAGACAAA GTAATTCAGG 121 CTCAAACTGC TTTTTCTGCA AACCCTGCCA ATCCAGCAAT TTTGTCAGAA GCTTCTGCTC 181 CTATCCCTCA CGATGGAAAT CTCTATCCCA GACTGTATCC AGAGCTCTCT CAATACATGG 241 GGCTGAGTTT AAATGAAGAA GAAATACGTG CAAATGTGGC CGTGGTTTCT GGTGCACCAC 301 TTCAGGGGCA GTTGGTAGCA AGACCTTCCA GTATAAACTA TATGGTGGCT CCTGTAACTG 361 GTAATGATGT TGGAATTCGT AGAGCAGAAA TTAAGCAAGG GATTCGTGAA GTCATTTTGT 421 GTAAGGATCA AGATGGAAAA ATTGGACTCA GGCTTAAATC AATAGATAAT GGTATATTTG 481 TTCAGCTAGT CCAGGCTAAT TCTCCAGCCT CATTGGTTGG TCTGAGATTT GGGGACCAAG 541 TACTTCAGAT CAATGGTGAA AACTGTGCAG GATGGAGCTC TGATAAAGCG CACAAGGTGC 601 TCAAACAGGC TTTTGGAGAG AAGATTACCA TGACCATTCG TGACAGGCCC TTTGAACGGA 661 CGATTACCAT GCATAAGGAT AGCACTGGAC ATGTTGGTTT TATCTTTAAA AATGGAAAAA 721 TAACATCCAT AGTGAAAGAT AGCTCTGCAG CCAGAAATGG TCTTCTCACG GAACATAACA 781 TCTGTGAAAT CAATGGACAG AATGTCATTG GATTGAAGGA CTCTCAAATT GCAGACATAC 841 TGTCAACATC TGGGACTGTA GTTACTATTA CAATCATGCC TGCTTTTATC TTTGAACATA 901 TTATTAAGCG GATGGCACCA AGCATTATGA AAAGCCTAAT GGACCACACC ATTCCTGAGG 961 TTTTGCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1021 gcaacgaac