Construct: ORF ccsbBroadEn_01562

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001090.1_s300c1, BRDN0000394694
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNAPC3 (6619)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6619 SNAPC3 small nuclear RNA activatin... NM_001039697.1 100% 100%
2 human 6619 SNAPC3 small nuclear RNA activatin... XM_017015056.2 100% 100%
3 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369647.2 93.6% 93.4% 733_734insACC;735_736ins75
4 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369648.2 88.3% 88.5% (many diffs)
5 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369649.2 87.8% 87.8% 582_583ins150
6 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369650.2 86.6% 86.6% 813_814ins165
7 human 6619 SNAPC3 small nuclear RNA activatin... NM_001369651.2 81.6% 80% (many diffs)
8 human 6619 SNAPC3 small nuclear RNA activatin... NR_161445.1 42.8% 1_4delGAAC;1238_2878del
9 human 6619 SNAPC3 small nuclear RNA activatin... NR_161433.2 38.3% 1_4delGAAC;1238_3214del
10 human 6619 SNAPC3 small nuclear RNA activatin... NR_161441.1 34.3% 1_4delGAAC;737_738ins243;995_2635del
11 human 6619 SNAPC3 small nuclear RNA activatin... NR_161446.2 22.2% 1_4delGAAC;737_741delGTAAG;1243_5531del
12 human 6619 SNAPC3 small nuclear RNA activatin... NR_161448.2 20.8% 1_4delGAAC;736_737ins83;1155_5443del
13 human 6619 SNAPC3 small nuclear RNA activatin... NR_161442.2 19.3% (many diffs)
14 human 6619 SNAPC3 small nuclear RNA activatin... NR_161435.2 18.1% 1_4delGAAC;1238_6792del
15 human 6619 SNAPC3 small nuclear RNA activatin... NR_161447.2 18.1% 1_4delGAAC;737_741delGTAAG;1243_6797del
16 human 6619 SNAPC3 small nuclear RNA activatin... NR_161436.2 18% 1_4delGAAC;584_585ins233;1005_5293del
17 human 6619 SNAPC3 small nuclear RNA activatin... NR_161449.2 17.8% 1_4delGAAC;736_737ins248;990_5278del
18 human 6619 SNAPC3 small nuclear RNA activatin... NR_161438.2 17% (many diffs)
19 human 6619 SNAPC3 small nuclear RNA activatin... NR_161444.2 16.9% 1_4delGAAC;736_737ins83;1155_6709del
20 human 6619 SNAPC3 small nuclear RNA activatin... NR_161434.2 16.9% 1_4delGAAC;395_396ins85;1153_6707del
21 human 6619 SNAPC3 small nuclear RNA activatin... NR_161437.2 15.9% 1_4delGAAC;586_587ins150;1088_6642del
22 human 6619 SNAPC3 small nuclear RNA activatin... NR_161439.2 15.7% 1_4delGAAC;817_818ins165;1073_6627del
23 human 6619 SNAPC3 small nuclear RNA activatin... NR_161443.2 14.7% 1_4delGAAC;584_585ins233;1005_6559del
24 human 6619 SNAPC3 small nuclear RNA activatin... NR_161450.2 14.5% 1_4delGAAC;737_738ins243;995_6549del
25 human 6619 SNAPC3 small nuclear RNA activatin... NR_161440.2 14.5% 1_4delGAAC;736_737ins248;990_6544del
26 mouse 77634 Snapc3 small nuclear RNA activatin... NM_029949.3 83.6% 84.9% (many diffs)
27 mouse 77634 Snapc3 small nuclear RNA activatin... XM_006538369.3 83.6% 84.9% (many diffs)
28 mouse 77634 Snapc3 small nuclear RNA activatin... XM_006538370.3 83.6% 84.9% (many diffs)
29 mouse 77634 Snapc3 small nuclear RNA activatin... XM_006538372.3 83.6% 84.9% (many diffs)
30 mouse 77634 Snapc3 small nuclear RNA activatin... XM_011250134.2 83.6% 84.9% (many diffs)
31 mouse 77634 Snapc3 small nuclear RNA activatin... XM_017320455.1 83.6% 84.9% (many diffs)
32 mouse 77634 Snapc3 small nuclear RNA activatin... XM_017320456.1 83.6% 84.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1302
ORF length:
1233
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTGAAGGA AGCCGAGGTG GCCCTACGTG TAGCGGGGTG GGTGGCAGGC
121AGGACCCAGT CTCCGGCAGT GGCGGCTGCA ACTTTCCAGA GTATGAGCTT CCCGAGCTAA
181ATACGCGCGC TTTCCATGTG GGCGCCTTTG GGGAGCTGTG GCGGGGCCGT CTGCGCGGGG
241CCGGGGACTT GTCGCTGAGG GAGCCGCCGG CATCCGCTCT GCCTGGGAGC CAGGCAGCTG
301ACTCCGACCG GGAGGATGCC GCGGTGGCCA GGGATCTGGA CTGCAGCCTG GAGGCGGCGG
361CTGAGCTGAG GGCGGTGTGC GGCCTTGATA AACTGAAATG CCTTGAGGAC GGTGAGGATC
421CAGAAGTCAT TCCGGAGAAT ACTGACCTGG TGACTTTGGG GGTTAGAAAA AGGTTCTTGG
481AACATCGGGA AGAAACCATT ACAATAGATC GAGCCTGCAG ACAAGAAACA TTCGTTTATG
541AGATGGAGTC ACATGCCATA GGAAAAAAGC CTGAAAATTC AGCAGACATG ATTGAAGAAG
601GGGAGCTTAT CCTATCTGTG AATATCTTGT ACCCTGTTAT ATTTCATAAG CACAAAGAAC
661ACAAACCATA CCAAACAATG CTGGTGTTGG GCAGTCAAAA ACTCACACAA CTGAGGGATT
721CAATTCGATG TGTCAGTGAC CTCCAGATTG GTGGTGAATT CAGCAACACT CCTGACCAAG
781CCCCTGAGCA CATCAGCAAA GACCTATACA AATCAGCCTT CTTTTATTTT GAAGGAACAT
841TTTATAATGA TAAAAGATAC CCAGAATGCA GAGATTTGAG CAGAACTATC ATTGAGTGGT
901CAGAGTCCCA TGATAGAGGC TATGGAAAGT TTCAGACTGC TAGAATGGAA GATTTCACCT
961TCAATGACTT GTGTATTAAA CTGGGTTTTC CTTACTTATA CTGTCATCAG GGAGACTGTG
1021AACATGTCAT TGTCATTACT GACATAAGGC TTGTGCATCA TGATGACTGC TTGGATAGGA
1081CATTGTATCC CCTCCTTATC AAGAAGCATT GGCTATGGAC CAGAAAATGT TTTGTTTGTA
1141AAATGTATAC AGCCAGATGG GTGACGAACA ATGACAGTTT TGCACCAGAG GACCCATGCT
1201TCTTTTGTGA TGTTTGCTTC CGAATGCTGC ACTATGATTC AGAAGGCAAC AAACTGGGGG
1261AATTCCTTGC TTATCCTTAT GTTGATCCTG GAACCTTTAA TTTGCCAACT TTCTTGTACA
1321AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)