Transcript: Mouse XM_017320456.1

PREDICTED: Mus musculus small nuclear RNA activating complex, polypeptide 3 (Snapc3), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Snapc3 (77634)
Length:
7814
CDS:
54..1277

Additional Resources:

NCBI RefSeq record:
XM_017320456.1
NBCI Gene record:
Snapc3 (77634)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_017320456.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000099367 GCGCCTGTAGACAAGAAATAT pLKO.1 484 CDS 100% 15.000 21.000 N Snapc3 n/a
2 TRCN0000099368 CCACTATGATTCCGAAGGCAA pLKO.1 1202 CDS 100% 2.640 3.696 N Snapc3 n/a
3 TRCN0000262230 CTATCTGTGAACATCTTATAT pLKO_005 585 CDS 100% 15.000 12.000 N Snapc3 n/a
4 TRCN0000099365 CCCTTCAAATATCTGTAGTAA pLKO.1 1582 3UTR 100% 5.625 4.500 N Snapc3 n/a
5 TRCN0000099366 GCGGCCTTGATAAACTGAGAT pLKO.1 352 CDS 100% 4.950 3.960 N Snapc3 n/a
6 TRCN0000262229 CCTTTAATTAGTACCAGATAT pLKO_005 1267 CDS 100% 13.200 9.240 N Snapc3 n/a
7 TRCN0000282147 AGTCCCATGATCGAGGATATG pLKO_005 877 CDS 100% 10.800 7.560 N Snapc3 n/a
8 TRCN0000262231 TTTCCTACTACAGCTTAGTTA pLKO_005 1287 3UTR 100% 5.625 3.938 N Snapc3 n/a
9 TRCN0000099369 CCAGCAGACATGATTGAAGAA pLKO.1 552 CDS 100% 4.950 3.465 N Snapc3 n/a
10 TRCN0000262232 GACTTGAGCAGAACTATTATA pLKO_005 846 CDS 100% 15.000 9.000 N Snapc3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017320456.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01562 pDONR223 100% 83.6% 84.9% None (many diffs) n/a
2 ccsbBroad304_01562 pLX_304 0% 83.6% 84.9% V5 (many diffs) n/a
3 TRCN0000470156 CTATCGTCGTGCAATTATATCCCT pLX_317 39% 83.6% 84.9% V5 (many diffs) n/a
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