Construct: ORF ccsbBroadEn_01631

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011472.1_s300c1, BRDN0000457316
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYCP1 (6847)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6847 SYCP1 synaptonemal complex protein 1 NM_001282541.1 100% 100%
2 human 6847 SYCP1 synaptonemal complex protein 1 NM_003176.4 100% 100%
3 human 6847 SYCP1 synaptonemal complex protein 1 XM_006710859.1 100% 100%
4 human 6847 SYCP1 synaptonemal complex protein 1 XM_017002184.1 100% 100%
5 human 6847 SYCP1 synaptonemal complex protein 1 XM_005271155.4 98.1% 98.1% 235_236ins54
6 human 6847 SYCP1 synaptonemal complex protein 1 NM_001282542.1 97.4% 97.4% 2246_2247ins75
7 human 6847 SYCP1 synaptonemal complex protein 1 XM_005271156.1 94.3% 94.3% 291_292ins165
8 human 6847 SYCP1 synaptonemal complex protein 1 NR_104211.2 82.1% 1_180del;2884_2986del;3212_3565del
9 human 6847 SYCP1 synaptonemal complex protein 1 XM_017002185.1 80.7% 79.9% (many diffs)
10 human 6847 SYCP1 synaptonemal complex protein 1 XM_011542037.2 80.1% 79% (many diffs)
11 human 6847 SYCP1 synaptonemal complex protein 1 XM_011542038.2 78.3% 78.3% 0_1ins633
12 human 6847 SYCP1 synaptonemal complex protein 1 XM_011542039.1 56.3% 56.2% 1650_1650delAins1279
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2997
ORF length:
2928
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGAAAAGCAA AAGCCCTTTG CATTGTTCGT ACCACCGAGA TCAAGCAGCA
121GTCAGGTGTC TGCGGTGAAA CCTCAGACCC TGGGAGGCGA TTCCACTTTC TTCAAGAGTT
181TCAACAAATG TACTGAAGAT GATTTTGAGT TTCCATTTGC AAAGACTAAT CTCTCCAAAA
241ATGGGGAAAA CATTGATTCA GATCCTGCTT TACAAAAAGT TAATTTCTTG CCCGTGCTTG
301AGCAGGTTGG TAATTCTGAC TGTCACTATC AGGAAGGACT AAAAGACTCT GATTTGGAGA
361ATTCAGAGGG ATTGAGCAGA GTGTATTCAA AACTGTATAA GGAGGCTGAA AAGATAAAAA
421AATGGAAAGT AAGTACAGAA GCTGAACTGA GACAGAAAGA AAGTAAGTTG CAAGAAAACA
481GAAAGATAAT TGAAGCACAG CGAAAAGCCA TTCAGGAACT GCAATTTGGA AATGAAAAAG
541TAAGTTTGAA ATTAGAAGAA GGAATACAAG AAAATAAAGA TTTAATAAAA GAGAATAATG
601CCACAAGGCA TTTATGTAAT CTACTCAAAG AAACCTGTGC TAGATCTGCA GAAAAGACAA
661AGAAATATGA ATATGAACGG GAAGAAACCA GGCAAGTTTA TATGGATCTA AATAATAACA
721TTGAGAAAAT GATAACAGCT TTTGAGGAAC TTCGTGTGCA AGCTGAGAAT TCCAGACTGG
781AAATGCATTT TAAGTTAAAG GAAGATTATG AAAAAATCCA ACACCTTGAA CAAGAATACA
841AGAAGGAAAT AAATGACAAG GAAAAGCAGG TATCACTACT ATTGATCCAA ATCACTGAGA
901AAGAAAATAA AATGAAAGAT TTAACATTTC TGCTAGAGGA ATCCAGAGAT AAAGTTAATC
961AATTAGAGGA AAAGACAAAA TTACAGAGTG AAAACTTAAA ACAATCAATT GAGAAACAGC
1021ATCATTTGAC TAAAGAACTA GAAGATATTA AAGTGTCATT ACAAAGAAGT GTGAGTACTC
1081AAAAGGCTTT AGAGGAAGAT TTACAGATAG CAACAAAAAC AATTTGTCAG CTAACTGAAG
1141AAAAAGAAAC TCAAATGGAA GAATCTAATA AAGCTAGAGC TGCTCATTCG TTTGTGGTTA
1201CTGAATTTGA AACTACTGTC TGCAGCTTGG AAGAATTATT GAGAACAGAA CAGCAAAGAT
1261TGGAAAAAAA TGAAGATCAA TTGAAAATAC TTACCATGGA GCTTCAAAAG AAATCAAGTG
1321AGCTGGAAGA GATGACTAAG CTTACAAATA ACAAAGAAGT AGAACTTGAA GAATTGAAAA
1381AAGTCTTGGG AGAAAAGGAA ACACTTTTAT ATGAAAATAA ACAATTTGAG AAGATTGCTG
1441AAGAATTAAA AGGAACAGAA CAAGAACTAA TTGGTCTTCT CCAAGCCAGA GAGAAAGAAG
1501TACATGATTT GGAAATACAG TTAACTGCCA TTACCACAAG TGAACAGTAT TATTCAAAAG
1561AGGTTAAAGA TCTAAAAACT GAGCTTGAAA ACGAGAAGCT TAAGAATACT GAATTAACTT
1621CACACTGCAA CAAGCTTTCA CTAGAAAACA AAGAGCTCAC ACAGGAAACA AGTGATATGA
1681CCCTAGAACT CAAGAATCAG CAAGAAGATA TTAATAATAA CAAAAAGCAA GAAGAAAGGA
1741TGTTGAAACA AATAGAAAAT CTTCAAGAAA CAGAAACCCA ATTAAGAAAT GAACTAGAAT
1801ATGTGAGAGA AGAGCTAAAA CAGAAAAGAG ATGAAGTTAA ATGTAAATTG GACAAGAGTG
1861AAGAAAATTG TAACAATTTA AGGAAACAAG TTGAAAATAA AAACAAGTAT ATTGAAGAAC
1921TTCAGCAGGA GAATAAGGCC TTGAAAAAAA AAGGTACAGC AGAAAGCAAG CAACTGAATG
1981TTTATGAGAT AAAGGTCAAT AAATTAGAGT TAGAACTAGA AAGTGCCAAA CAGAAATTTG
2041GAGAAATCAC AGACACCTAT CAGAAAGAAA TTGAGGACAA AAAGATATCA GAAGAAAATC
2101TTTTGGAAGA GGTTGAGAAA GCAAAAGTAA TAGCTGATGA AGCAGTAAAA TTACAGAAAG
2161AAATTGATAA GCGATGTCAA CATAAAATAG CTGAAATGGT AGCACTTATG GAAAAACATA
2221AGCACCAATA TGATAAGATC ATTGAAGAAA GAGACTCAGA ATTAGGACTT TATAAGAGCA
2281AAGAACAAGA ACAGTCATCA CTGAGAGCAT CTTTGGAGAT TGAACTATCC AATCTCAAAG
2341CTGAACTTTT GTCTGTTAAG AAGCAACTTG AAATAGAAAG AGAAGAGAAG GAAAAACTCA
2401AAAGAGAGGC AAAAGAAAAC ACAGCTACTC TTAAAGAAAA AAAAGACAAG AAAACACAAA
2461CATTTTTATT GGAAACACCT GAAATTTATT GGAAATTGGA TTCTAAAGCA GTTCCTTCAC
2521AAACTGTATC TCGAAATTTC ACATCAGTTG ATCATGGCAT ATCCAAAGAT AAAAGAGACT
2581ATCTGTGGAC ATCTGCCAAA AATACTTTAT CTACACCATT GCCAAAGGCA TATACAGTGA
2641AGACACCAAC AAAACCAAAA CTACAGCAAA GAGAAAACTT GAATATACCC ATTGAAGAAA
2701GTAAAAAAAA GAGAAAAATG GCCTTTGAAT TTGATATTAA TTCAGATAGT TCAGAAACTA
2761CTGATCTTTT GAGCATGGTT TCAGAAGAAG AGACATTGAA AACACTGTAT AGGAACAATA
2821ATCCACCAGC TTCTCATCTT TGTGTCAAAA CACCAAAAAA GGCCCCTTCA TCTCTAACAA
2881CCCCTGGATC TACACTGAAG TTTGGAGCTA TAAGAAAAAT GCGGGAGGAC CGTTGGGCTG
2941TAATTGCTAA AATGGATAGA AAAAAAAAAC TAAAAGAAGC TGAAAAGTTA TTTGTTTTGC
3001CAACTTTCTT GTACAAAGTT GGcattataa gaaagcattg cttatcaatt tgttgcaacg
3061aac

Download FASTA (ORF) (Full)