Construct: ORF ccsbBroadEn_01680

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011954.1_s300c1, BRDN0000386183
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NR2E1 (7101)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7101 NR2E1 nuclear receptor subfamily ... NM_003269.5 100% 100%
2 human 7101 NR2E1 nuclear receptor subfamily ... NM_001286102.1 90.3% 88.9% (many diffs)
3 mouse 21907 Nr2e1 nuclear receptor subfamily ... NM_152229.2 91.8% 98.9% (many diffs)
4 mouse 21907 Nr2e1 nuclear receptor subfamily ... XM_006512701.2 90.5% 96.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1221
ORF length:
1155
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CAAGCCAGCC GGATCAACAA GCCGCATTTT AGATATCCCC TGCAAAGTGT
121GTGGCGACCG CAGCTCGGGG AAGCACTACG GGGTCTACGC CTGCGACGGC TGCTCAGGTT
181TTTTCAAACG GAGCATCCGA AGGAATAGGA CCTATGTCTG CAAATCTGGA AACCAGGGAG
241GCTGTCCGGT GGACAAGACG CACAGAAACC AGTGCAGGGC GTGTCGGCTG AAGAAGTGTT
301TGGAAGTCAA CATGAACAAA GACGCCGTGC AGCACGAGCG GGGGCCTCGG ACGTCCACCA
361TCCGCAAGCA AGTGGCCCTC TACTTCCGTG GACACAAGGA GGAGAACGGG GCCGCCGCGC
421ACTTTCCCTC GGCGGCGCTC CCTGCGCCGG CCTTCTTCAC CGCGGTCACG CAGCTGGAGC
481CGCACGGCCT GGAGCTGGCC GCGGTGTCCA CCACTCCAGA GCGGCAGACC CTCGTGAGCC
541TGGCTCAGCC CACGCCCAAG TACCCCCATG AAGTGAATGG GACCCCAATG TATCTCTATG
601AAGTGGCCAC GGAGTCGGTG TGTGAATCAG CTGCCAGACT TCTCTTCATG AGCATCAAGT
661GGGCTAAGAG TGTGCCAGCC TTCTCCACGC TGTCTTTGCA AGACCAGCTG ATGCTTTTGG
721AAGATGCTTG GAGAGAACTG TTTGTTCTAG GAATAGCACA ATGGGCCATT CCGGTTGATG
781CTAACACTCT ACTGGCTGTA TCTGGCATGA ACGGTGACAA CACAGATTCC CAGAAGCTGA
841ACAAGATCAT ATCTGAAATA CAGGCTTTAC AAGAGGTGGT GGCTCGATTT AGACAACTCC
901GGTTAGATGC TACTGAATTT GCCTGTCTAA AATGCATCGT CACTTTCAAA GCCGTTCCTA
961CACATAGTGG TTCTGAACTG AGAAGTTTCC GGAATGCTGC CGCCATTGCA GCCCTTCAAG
1021ATGAGGCTCA GCTAACGCTC AACAGCTACA TCCATACCAG ATATCCCACT CAACCCTGTC
1081GCTTTGGAAA ACTCCTGTTG CTTTTGCCAG CTTTACGTTC TATTAGCCCA TCAACTATAG
1141AAGAAGTGTT TTTCAAAAAA ACCATCGGCA ATGTGCCAAT TACAAGACTG CTTTCAGATA
1201TGTACAAATC CAGTGATATC TACCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
1261attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)