Construct: ORF ccsbBroadEn_01686

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004706.1_s300c1, BRDN0000394844
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TNFAIP3 (7128)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7128 TNFAIP3 TNF alpha induced protein 3 NM_001270507.2 100% 100%
2 human 7128 TNFAIP3 TNF alpha induced protein 3 NM_001270508.2 100% 100%
3 human 7128 TNFAIP3 TNF alpha induced protein 3 NM_006290.4 100% 100%
4 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_005267119.1 100% 100%
5 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_011536095.1 100% 100%
6 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_024446532.1 100% 100%
7 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_024446533.1 100% 100%
8 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_011536096.2 87.2% 82.4% 1906_1907ins182;2067_2068ins121
9 human 7128 TNFAIP3 TNF alpha induced protein 3 XM_006715555.1 73% 73% 0_1ins639
10 mouse 21929 Tnfaip3 tumor necrosis factor, alph... NM_009397.3 83.6% 88.1% (many diffs)
11 mouse 21929 Tnfaip3 tumor necrosis factor, alph... XM_006512702.2 83.6% 88.1% (many diffs)
12 mouse 21929 Tnfaip3 tumor necrosis factor, alph... NM_001166402.1 79.9% 84.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2439
ORF length:
2370
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTGAACAA GTCCTTCCTC AGGCTTTGTA TTTGAGCAAT ATGCGGAAAG
121CTGTGAAGAT ACGGGAGAGA ACTCCAGAAG ACATTTTTAA ACCTACTAAT GGGATCATTC
181ATCATTTTAA AACCATGCAC CGATACACAC TGGAAATGTT CAGAACTTGC CAGTTTTGTC
241CTCAGTTTCG GGAGATCATC CACAAAGCCC TCATCGACAG AAACATCCAG GCCACCCTGG
301AAAGCCAGAA GAAACTCAAC TGGTGTCGAG AAGTCCGGAA GCTTGTGGCG CTGAAAACGA
361ACGGTGACGG CAATTGCCTC ATGCATGCCA CTTCTCAGTA CATGTGGGGC GTTCAGGACA
421CAGACTTGGT ACTGAGGAAG GCGCTGTTCA GCACGCTCAA GGAAACAGAC ACACGCAACT
481TTAAATTCCG CTGGCAACTG GAGTCTCTCA AATCTCAGGA ATTTGTTGAA ACGGGGCTTT
541GCTATGATAC TCGGAACTGG AATGATGAAT GGGACAATCT TATCAAAATG GCTTCCACAG
601ACACACCCAT GGCCCGAAGT GGACTTCAGT ACAACTCACT GGAAGAAATA CACATATTTG
661TCCTTTGCAA CATCCTCAGA AGGCCAATCA TTGTCATTTC AGACAAAATG CTAAGAAGTT
721TGGAATCAGG TTCCAATTTC GCCCCTTTGA AAGTGGGTGG AATTTACTTG CCTCTCCACT
781GGCCTGCCCA GGAATGCTAC AGATACCCCA TTGTTCTCGG CTATGACAGC CATCATTTTG
841TACCCTTGGT GACCCTGAAG GACAGTGGGC CTGAAATCCG AGCTGTTCCA CTTGTTAACA
901GAGACCGGGG AAGATTTGAA GACTTAAAAG TTCACTTTTT GACAGATCCT GAAAATGAGA
961TGAAGGAGAA GCTCTTAAAA GAGTACTTAA TGGTGATAGA AATCCCCGTC CAAGGCTGGG
1021ACCATGGCAC AACTCATCTC ATCAATGCCG CAAAGTTGGA TGAAGCTAAC TTACCAAAAG
1081AAATCAATCT GGTAGATGAT TACTTTGAAC TTGTTCAGCA TGAGTACAAG AAATGGCAGG
1141AAAACAGCGA GCAGGGGAGG AGAGAGGGGC ACGCCCAGAA TCCCATGGAA CCTTCCGTGC
1201CCCAGCTTTC TCTCATGGAT GTAAAATGTG AAACGCCCAA CTGCCCCTTC TTCATGTCTG
1261TGAACACCCA GCCTTTATGC CATGAGTGCT CAGAGAGGCG GCAAAAGAAT CAAAACAAAC
1321TCCCAAAGCT GAACTCCAAG CCGGGCCCTG AGGGGCTCCC TGGCATGGCG CTCGGGGCCT
1381CTCGGGGAGA AGCCTATGAG CCCTTGGCGT GGAACCCTGA GGAGTCCACT GGGGGGCCTC
1441ATTCGGCCCC ACCGACAGCA CCCAGCCCTT TTCTGTTCAG TGAGACCACT GCCATGAAGT
1501GCAGGAGCCC CGGCTGCCCC TTCACACTGA ATGTGCAGCA CAACGGATTT TGTGAACGTT
1561GCCACAACGC CCGGCAACTT CACGCCAGCC ACGCCCCAGA CCACACAAGG CACTTGGATC
1621CCGGGAAGTG CCAAGCCTGC CTCCAGGATG TTACCAGGAC ATTTAATGGG ATCTGCAGTA
1681CTTGCTTCAA AAGGACTACA GCAGAGGCCT CCTCCAGCCT CAGCACCAGC CTCCCTCCTT
1741CCTGTCACCA GCGTTCCAAG TCAGATCCCT CGCGGCTCGT CCGGAGCCCC TCCCCGCATT
1801CTTGCCACAG AGCTGGAAAC GACGCCCCTG CTGGCTGCCT GTCTCAAGCT GCACGGACTC
1861CTGGGGACAG GACGGGGACG AGCAAGTGCA GAAAAGCCGG CTGCGTGTAT TTTGGGACTC
1921CAGAAAACAA GGGCTTTTGC ACACTGTGTT TCATCGAGTA CAGAGAAAAC AAACATTTTG
1981CTGCTGCCTC AGGGAAAGTC AGTCCCACAG CGTCCAGGTT CCAGAACACC ATTCCGTGCC
2041TGGGGAGGGA ATGCGGCACC CTTGGAAGCA CCATGTTTGA AGGATACTGC CAGAAGTGTT
2101TCATTGAAGC TCAGAATCAG AGATTTCATG AGGCCAAAAG GACAGAAGAG CAACTGAGAT
2161CGAGCCAGCG CAGAGATGTG CCTCGAACCA CACAAAGCAC CTCAAGGCCC AAGTGCGCCC
2221GGGCCTCCTG CAAGAACATC CTGGCCTGCC GCAGCGAGGA GCTCTGCATG GAGTGTCAGC
2281ATCCCAACCA GAGGATGGGC CCTGGGGCCC ACCGGGGTGA GCCTGCCCCC GAAGACCCCC
2341CCAAGCAGCG TTGCCGGGCC CCCGCCTGTG ATCATTTTGG CAATGCCAAG TGCAACGGCT
2401ACTGCAACGA ATGCTTTCAG TTCAAGCAGA TGTATGGCTT GCCAACTTTC TTGTACAAAG
2461Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac

Download FASTA (ORF) (Full)

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