Construct: ORF ccsbBroadEn_01715

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014849.1_s300c1, BRDN0000394454
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRPC4 (7223)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7223 TRPC4 transient receptor potentia... NM_016179.4 100% 100%
2 human 7223 TRPC4 transient receptor potentia... NM_003306.3 99.4% 99.4% 2080_2094del
3 human 7223 TRPC4 transient receptor potentia... NM_001135955.3 91.4% 91.4% 2351_2352ins252
4 human 7223 TRPC4 transient receptor potentia... NM_001135957.3 85.5% 85.5% 2181_2182ins423
5 human 7223 TRPC4 transient receptor potentia... NM_001135956.3 84.7% 84.7% 1884_1885ins195;2156_2157ins252
6 human 7223 TRPC4 transient receptor potentia... NM_001135958.3 82.2% 82.2% 376_377ins519
7 human 7223 TRPC4 transient receptor potentia... NM_001354799.2 57% 57% 0_1ins1260
8 human 7223 TRPC4 transient receptor potentia... NM_001354806.2 57% 57% 0_1ins1260
9 human 7223 TRPC4 transient receptor potentia... NM_001372055.1 57% 57% 0_1ins1260
10 human 7223 TRPC4 transient receptor potentia... XM_011535206.1 56.7% 56.7% 0_1ins1260;820_834del
11 human 7223 TRPC4 transient receptor potentia... XM_017020723.1 56.7% 56.7% 0_1ins1260;820_834del
12 mouse 22066 Trpc4 transient receptor potentia... NM_016984.3 87.9% 96.8% (many diffs)
13 mouse 22066 Trpc4 transient receptor potentia... XM_006501296.3 87.9% 96.8% (many diffs)
14 mouse 22066 Trpc4 transient receptor potentia... NM_001253682.1 80.1% 88.7% (many diffs)
15 mouse 22066 Trpc4 transient receptor potentia... XM_017319534.1 80.1% 88.6% (many diffs)
16 mouse 22066 Trpc4 transient receptor potentia... NR_046161.1 72.1% (many diffs)
17 mouse 22066 Trpc4 transient receptor potentia... XM_006501297.3 49.7% 53.8% (many diffs)
18 mouse 22066 Trpc4 transient receptor potentia... XM_006501298.1 49.7% 53.8% (many diffs)
19 mouse 22066 Trpc4 transient receptor potentia... NM_001253683.1 38.8% 41.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3000
ORF length:
2931
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCTCAGTTC TATTACAAAA GAAATGTTAA TGCTCCCTAT AGAGACCGCA
121TCCCTCTAAG GATAGTAAGA GCAGAATCAG AACTCTCGCC ATCAGAAAAA GCCTACTTGA
181ATGCTGTGGA AAAGGGAGAT TATGCCAGTG TCAAGAAATC CCTAGAGGAA GCTGAAATTT
241ATTTTAAAAT CAATATTAAT TGCATTGATC CTCTCGGAAG AACTGCTCTC CTCATTGCAA
301TTGAAAATGA GAACTTGGAG CTCATCGAAC TACTCTTAAG CTTTAATGTC TATGTTGGAG
361ATGCTCTATT ACATGCTATC AGAAAAGAAG TCGTCGGAGC TGTTGAGCTG TTATTGAACC
421ACAAAAAACC TAGTGGAGAA AAACAGGTGC CTCCTATACT CCTTGATAAG CAGTTCTCTG
481AATTCACTCC AGACATTACA CCAATCATTT TGGCAGCCCA TACAAATAAT TATGAGATAA
541TAAAACTCTT GGTTCAGAAA GGAGTCTCAG TGCCTCGACC CCACGAGGTC CGCTGTAACT
601GTGTGGAATG CGTGTCCAGT TCAGATGTGG ACAGCCTCCG TCACTCACGC TCCAGACTCA
661ACATCTACAA GGCCTTGGCC AGTCCCTCTC TCATTGCACT GTCAAGCGAA GATCCTTTTC
721TCACAGCCTT TCAGTTAAGT TGGGAACTTC AGGAACTGAG CAAGGTGGAA AATGAATTCA
781AGTCGGAGTA TGAAGAGCTG TCACGGCAGT GCAAACAATT TGCTAAGGAC CTACTGGATC
841AGACGAGAAG TTCCAGAGAA CTGGAAATCA TTCTTAATTA CCGAGATGAC AATAGTCTCA
901TAGAAGAACA AAGTGGAAAT GATCTTGCAA GACTAAAATT GGCCATTAAG TACCGTCAAA
961AAGAGTTTGT TGCCCAGCCC AATTGTCAAC AGCTGCTGGC ATCTCGCTGG TACGATGAGT
1021TTCCAGGCTG GAGGAGAAGA CACTGGGCAG TGAAGATGGT GACATGTTTC ATAATAGGAC
1081TTCTTTTTCC TGTCTTCTCT GTGTGCTACC TGATAGCTCC CAAAAGCCCA CTTGGACTGT
1141TCATCAGGAA GCCATTTATC AAGTTTATCT GCCACACAGC CTCCTATTTG ACTTTTTTGT
1201TCCTGCTGCT GCTTGCCTCT CAGCACATCG ACAGGTCAGA CTTGAACAGG CAAGGTCCAC
1261CACCAACCAT CGTCGAGTGG ATGATATTAC CGTGGGTCCT GGGCTTCATA TGGGGAGAAA
1321TTAAACAGAT GTGGGATGGC GGACTTCAGG ACTACATCCA TGATTGGTGG AATCTAATGG
1381ACTTTGTAAT GAACTCCTTA TATTTAGCAA CAATCTCCTT GAAAATTGTT GCATTTGTAA
1441AGTACAGTGC CCTTAATCCA CGAGAATCAT GGGACATGTG GCATCCCACT CTGGTGGCAG
1501AGGCTTTATT TGCTATTGCA AACATCTTCA GTTCTCTGCG TCTGATCTCA CTGTTTACTG
1561CAAATTCTCA CCTGGGACCT CTGCAAATAT CTCTGGGAAG AATGCTCCTG GACATTTTGA
1621AGTTTCTATT CATATACTGC CTTGTGTTGC TAGCATTTGC AAATGGCCTA AATCAATTGT
1681ACTTCTATTA TGAAGAAACG AAAGGGTTAA CCTGCAAAGG CATAAGATGT GAAAAGCAGA
1741ATAATGCATT TTCAACGTTA TTTGAGACAC TGCAGTCCCT GTTTTGGTCA ATATTTGGGC
1801TCATCAATTT ATATGTGACC AATGTCAAAG CACAGCATGA ATTTACTGAG TTTGTTGGTG
1861CCACCATGTT TGGGACATAC AATGTCATCT CTCTGGTTGT TCTACTCAAC ATGTTAATAG
1921CTATGATGAA TAATTCTTAC CAACTGATTG CTGACCATGC AGATATAGAA TGGAAATTTG
1981CACGAACAAA GCTTTGGATG AGTTATTTTG AAGAAGGAGG TACTCTGCCT ACTCCCTTCA
2041ATGTCATCCC GAGCCCCAAG TCTCTCTGGT ACCTGATCAA ATGGATCTGG ACACACTTGT
2101GCAAGAAAAA GATGAGAAGA AAGCCAGAAA GTTTTGGAAC AATAGGGAGG CGAGCTGCTG
2161ATAACTTGAG AAGACATCAC CAATACCAAG AAGTTATGAG GAACCTGGTG AAGCGATACG
2221TTGCTGCAAT GATTAGAGAT GCTAAAACTG AAGAAGGCCT GACCGAAGAG AACTTTAAGG
2281AACTAAAGCA AGACATTTCT AGTTTCCGCT TTGAAGTCCT GGGATTACTA AGAGGAAGCA
2341AACTTTCCAC AATACAATCT GCGAATGCCT CGAAGGAGTC TTCAAATTCG GCAGACTCAG
2401ATGAAAAGAG TGATAGCGAA GGTAATAGCA AGGACAAGAA AAAGAATTTC AGCCTTTTTG
2461ATTTAACCAC CCTGATTCAT CCGAGATCAG CAGCAATTGC CTCTGAAAGA CATAACATAA
2521GCAATGGCTC TGCCCTGGTG GTTCAGGAGC CGCCCAGGGA GAAGCAGAGA AAAGTGAATT
2581TTGTGACCGA TATCAAAAAC TTTGGGTTAT TTCATAGACG ATCAAAACAA AATGCTGCTG
2641AGCAAAATGC AAACCAAATC TTCTCTGTTT CAGAAGAAGT TGCTCGTCAA CAGGCTGCAG
2701GACCACTTGA GAGAAATATT CAACTGGAAT CTCGAGGATT AGCTTCACGG GGTGACCTGA
2761GCATTCCCGG TCTCAGTGAA CAATGTGTGT TAGTAGACCA TAGAGAAAGG AATACGGACA
2821CACTGGGGTT ACAGGTAGGA AAGAGAGTGT GTCCATTCAA GTCAGAGAAG GTGGTGGTGG
2881AGGACACGGT TCCTATAATA CCAAAGGAGA AACATGCAAA AGAAGAGGAC TCTAGTATAG
2941ACTATGATCT AAACCTCCCA GACACAGTCA CCCACGAAGA TTACGTGACC ACAAGATTGT
3001TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
3061acgaac

Download FASTA (ORF) (Full)

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