Construct: ORF ccsbBroadEn_01790
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001370.1_s300c1, BRDN0000456194
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZFPL1 (7542)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 7542 | ZFPL1 | zinc finger protein like 1 | NM_006782.4 | 100% | 100% | |
| 2 | mouse | 81909 | Zfpl1 | zinc finger like protein 1 | NM_024231.2 | 87.3% | 92.2% | (many diffs) |
| 3 | mouse | 81909 | Zfpl1 | zinc finger like protein 1 | XM_006531861.1 | 87.3% | 92.2% | (many diffs) |
| 4 | mouse | 81909 | Zfpl1 | zinc finger like protein 1 | XM_006531862.1 | 87.3% | 92.2% | (many diffs) |
| 5 | mouse | 81909 | Zfpl1 | zinc finger like protein 1 | XM_006531863.3 | 87.3% | 92.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 996
- ORF length:
- 930
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCTTTGTAAG TGCCCCAAGA GAAAGGTGAC CAACCTGTTC TGCTTCGAAC 121 ATCGGGTCAA CGTCTGCGAG CACTGCCTGG TAGCCAATCA CGCCAAGTGC ATCGTCCAGT 181 CCTACCTGCA ATGGCTCCAA GATAGCGACT ACAACCCCAA TTGCCGCCTG TGCAACATAC 241 CCCTGGCCAG CCGAGAGACG ACCCGCCTTG TCTGCTATGA TCTCTTTCAC TGGGCCTGCC 301 TCAATGAACG TGCTGCCCAG CTACCCCGAA ACACGGCACC TGCCGGCTAT CAGTGCCCCA 361 GCTGCAATGG CCCCATCTTC CCCCCAACCA ACCTGGCTGG CCCCGTGGCC TCCGCACTGA 421 GAGAGAAGCT GGCCACAGTC AACTGGGCCC GGGCAGGACT GGGCCTCCCT CTGATCGATG 481 AGGTGGTGAG CCCAGAGCCC GAGCCCCTCA ACACGTCTGA CTTCTCTGAC TGGTCTAGTT 541 TTAATGCCAG CAGTACCCCT GGACCAGAGG AGGTAGACAG CGCCTCTGCT GCCCCAGCCT 601 TCTACAGCCA GGCCCCCCGG CCCCCAGCTT CCCCAGGCCG GCCCGAGCAG CACACAGTGA 661 TCCACATGGG CAATCCTGAG CCCTTGACTC ACGCCCCTAG GAAGGTGTAT GATACGCGGG 721 ATGATGACCG GACACCAGGC CTCCATGGAG ACTGTGACGA TGACAAGTAC CGACGTCGGC 781 CGGCCTTGGG TTGGCTGGCC CGGCTGCTAA GGAGCCGGGC TGGGTCTCGG AAGCGGCCGC 841 TGACCCTGCT CCAGCGGGCG GGGCTGCTGC TACTCTTGGG ACTGCTGGGC TTCCTGGCCC 901 TCCTTGCCCT CATGTCTCGC CTAGGCCGGG CCGCAGCTGA CAGCGATCCC AACCTGGACC 961 CACTCATGAA CCCTCACATC CGCGTGGGCC CCTCCTGCCC AACTTTCTTG TACAAAGTTG 1021 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac