Construct: ORF ccsbBroadEn_01877
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005890.1_s300c1, BRDN0000395759
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NAA10 (8260)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_003491.4 | 100% | 100% | |
| 2 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_001256120.2 | 97.4% | 97.4% | 161_162insGTATGTCCTGGCCAAAAT |
| 3 | human | 8260 | NAA10 | N(alpha)-acetyltransferase ... | NM_001256119.2 | 93.6% | 93.1% | 341_342ins45 |
| 4 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_019870.3 | 91.9% | 96.1% | (many diffs) |
| 5 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318575.1 | 71% | 74.3% | (many diffs) |
| 6 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_001177965.1 | 66.9% | 66.7% | (many diffs) |
| 7 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | NM_001310538.1 | 62.8% | 67.6% | (many diffs) |
| 8 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_011247647.2 | 62.5% | 42.6% | (many diffs) |
| 9 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318574.1 | 53.1% | 52.6% | (many diffs) |
| 10 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_011247649.1 | 51.8% | 55% | (many diffs) |
| 11 | mouse | 56292 | Naa10 | N(alpha)-acetyltransferase ... | XM_017318576.1 | 48.8% | 52.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 771
- ORF length:
- 705
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA CATCCGCAAT GCGAGGCCAG AGGACCTAAT GAACATGCAG CACTGCAACC 121 TCCTCTGCCT GCCCGAGAAC TACCAGATGA AATACTACTT CTACCATGGC CTTTCCTGGC 181 CCCAGCTCTC TTACATTGCT GAGGACGAGA ATGGGAAGAT TGTGGGGTAT GTCCTGGCCA 241 AAATGGAAGA GGACCCAGAT GATGTGCCCC ATGGACATAT CACCTCATTG GCTGTGAAGC 301 GTTCCCACCG GCGCCTCGGT CTGGCTCAGA AACTGATGGA CCAGGCCTCT CGAGCCATGA 361 TAGAGAACTT CAATGCCAAA TATGTCTCCC TGCATGTCAG GAAGAGTAAC CGGGCCGCCC 421 TGCACCTCTA TTCCAACACC CTCAACTTTC AGATCAGTGA AGTGGAGCCC AAATACTATG 481 CAGATGGGGA GGACGCCTAT GCCATGAAGC GGGACCTCAC TCAGATGGCC GACGAGCTGA 541 GGCGGCACCT GGAGCTGAAA GAGAAGGGCA GGCACGTGGT GCTGGGTGCC ATCGAGAACA 601 AGGTGGAGAG CAAAGGCAAT TCACCTCCGA GCTCAGGAGA GGCCTGTCGC GAGGAGAAGG 661 GCCTGGCTGC CGAGGATAGT GGTGGGGACA GCAAGGACCT CAGCGAGGTC AGCGAGACCA 721 CAGAGAGCAC AGATGTCAAG GACAGCTCAG AGGCCTCCGA CTCAGCCTCC TACCCAACTT 781 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac