Transcript: Mouse XM_011247649.1

PREDICTED: Mus musculus N(alpha)-acetyltransferase 10, NatA catalytic subunit (Naa10), transcript variant X5, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Naa10 (56292)
Length:
554
CDS:
141..539

Additional Resources:

NCBI RefSeq record:
XM_011247649.1
NBCI Gene record:
Naa10 (56292)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247649.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000348569 GTGGGCTACGTCTTGGCTAAA pLKO_005 297 CDS 100% 10.800 8.640 N Naa10 n/a
2 TRCN0000114578 CCATGGACATATCACCTCACT pLKO.1 344 CDS 100% 2.640 1.848 N Naa10 n/a
3 TRCN0000335521 CCATGGACATATCACCTCACT pLKO_005 344 CDS 100% 2.640 1.848 N Naa10 n/a
4 TRCN0000114580 CCAGATGAAGTACTATTTCTA pLKO.1 218 CDS 100% 5.625 3.375 N Naa10 n/a
5 TRCN0000335520 CCAGATGAAGTACTATTTCTA pLKO_005 218 CDS 100% 5.625 3.375 N Naa10 n/a
6 TRCN0000035415 GCCATGATAGAGAACTTCAAT pLKO.1 429 CDS 100% 5.625 3.375 N NAA10 n/a
7 TRCN0000288818 GCCATGATAGAGAACTTCAAT pLKO_005 429 CDS 100% 5.625 3.375 N NAA10 n/a
8 TRCN0000114579 CCTGCATGTCAGGAAGAGTAA pLKO.1 464 CDS 100% 4.950 2.970 N Naa10 n/a
9 TRCN0000035416 CCATGGACATATCACCTCATT pLKO.1 344 CDS 100% 4.950 3.465 N NAA10 n/a
10 TRCN0000306810 CCATGGACATATCACCTCATT pLKO_005 344 CDS 100% 4.950 3.465 N NAA10 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247649.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_11264 pDONR223 100% 80.7% 85.8% None (many diffs) n/a
2 ccsbBroad304_11264 pLX_304 0% 80.7% 85.8% V5 (many diffs) n/a
3 TRCN0000465347 GAGCAGATTCTGTGTGGGACTGTG pLX_317 84.5% 80.7% 85.8% V5 (many diffs) n/a
4 ccsbBroadEn_01877 pDONR223 100% 51.8% 55% None (many diffs) n/a
5 ccsbBroad304_01877 pLX_304 0% 51.8% 55% V5 (many diffs) n/a
6 TRCN0000472691 TCATCGAAGGACGTCAGACTTTAA pLX_317 65.1% 51.8% 55% V5 (many diffs) n/a
Download CSV