Construct: ORF ccsbBroadEn_01926
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009820.1_s300c1, BRDN0000391273
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BFSP2 (8419)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8419 | BFSP2 | beaded filament structural ... | NM_003571.4 | 99.9% | 100% | 603G>A |
| 2 | human | 8419 | BFSP2 | beaded filament structural ... | XM_017007315.1 | 99.8% | 100% | 603G>A;1245G>C |
| 3 | human | 8419 | BFSP2 | beaded filament structural ... | XM_024453788.1 | 46.9% | 46.9% | 0_1ins660 |
| 4 | human | 8419 | BFSP2 | beaded filament structural ... | XM_024453789.1 | 37.5% | 37.5% | 0_1ins777 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1314
- ORF length:
- 1245
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTGAGAGG CGAGTGGTAG TGGACTTGCC CACCAGTGCC AGCTCCAGCA 121 TGCCCCTCCA GAGGCGCAGG GCGTCCTTCA GGGGGCCACG GTCATCATCC TCCCTGGAGA 181 GCCCCCCAGC CTCCAGGACC AATGCCATGA GTGGCCTTGT CCGAGCACCC GGGGTCTATG 241 TAGGAACAGC ACCCAGTGGG TGCATAGGTG GCTTGGGTGC CCGTGTGACC CGCCGGGCCC 301 TCGGCATCAG CAGTGTCTTC CTTCAGGGCC TGCGGAGCTC AGGCCTGGCC ACCGTGCCGG 361 CTCCAGGTTT GGAGAGGGAC CATGGTGCTG TTGAGGACCT AGGGGGCTGC CTGGTGGAAT 421 ATATGGCCAA AGTGCACGCC CTTGAGCAAG TCAGTCAGGA GCTGGAAACA CAACTGCGGA 481 TGCACCTGGA GAGCAAAGCC ACACGCTCGG GAAACTGGGG TGCCCTACGG GCTTCCTGGG 541 CCAGCAGCTG CCAGCAGGTG GGTGAGGCAG TCTTGGAAAA TGCCCGGCTC ATGCTGCAGA 601 CAGAAACTAT CCAGGCCGGA GCAGATGACT TTAAAGAGAG ATATGAAAAT GAGCAGCCAT 661 TTCGAAAGGC AGCAGAAGAG GAAATTAACT CTCTGTATAA AGTCATTGAT GAGGCTAATT 721 TGACTAAAAT GGACCTGGAG AGTCAAATAG AAAGTCTGAA AGAAGAACTT GGCTCTCTAT 781 CAAGAAACTA TGAAGAGGAT GTGAAGCTGC TGCACAAACA GTTGGCAGGG TGTGAGCTGG 841 AACAAATGGA TGCTCCCATT GGCACTGGTC TGGACGACAT CCTTGAGACG ATCAGAATTC 901 AGTGGGAGAG AGATGTTGAA AAGAACCGGG TGGAGGCAGG AGCCCTGCTC CAAGCTAAGC 961 AACAGGCGGA GGTGGCCCAC ATGTCCCAGA CCCAGGAGGA GAAGCTGGCA GCTGCCCTCA 1021 GGGTGGAGTT ACACAACACT TCGTGCCAAG TCCAGAGCCT CCAGGCTGAG ACAGAATCCT 1081 TACGTGCCCT GAAACGAGGC CTGGAGAACA CCTTGCACGA TGCCAAGCAC TGGCATGACA 1141 TGGAGCTCCA GAACCTGGGC GCTGTGGTCG GCCGGCTGGA GGCGGAGCTC AGGGAAATCC 1201 GAGCGGAGGC GGAGCAGCAG CAACAGGAGC GCGCGCATCT GCTGGCCCGC AAGTGCCAGC 1261 TGCAGAAGGA CGTGGCGTCC TACCACGCCC TGCTGGACAG GGAGGAGAGC GGCTTGCCAA 1321 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac