Construct: ORF ccsbBroadEn_01933
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016511.1_s300c1, BRDN0000385306
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TEAD2 (8463)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_003598.2 | 100% | 100% | |
| 2 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_001256658.2 | 99.3% | 99.3% | 466_474delCAGGTGGTC |
| 3 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_001256659.2 | 99.3% | 99.3% | 466_474delCAGGTGGTC |
| 4 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527403.1 | 99.3% | 99.3% | 466_474delCAGGTGGTC |
| 5 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_001256660.2 | 99.1% | 99.1% | 360_371del |
| 6 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_001256661.2 | 99.1% | 99.1% | 360_371del |
| 7 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527399.2 | 98.4% | 98.4% | 360_371del;478_486delCAGGTGGTC |
| 8 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527400.2 | 98.4% | 98.4% | 360_371del;478_486delCAGGTGGTC |
| 9 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527401.1 | 98.4% | 98.4% | 360_371del;478_486delCAGGTGGTC |
| 10 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527402.2 | 98.4% | 98.4% | 360_371del;478_486delCAGGTGGTC |
| 11 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_006723428.3 | 97% | 97% | 1036_1037ins39 |
| 12 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527404.2 | 95.5% | 95.5% | 360_371del;478_486delCAGGTGGTC;1057_1058ins39 |
| 13 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_005259334.4 | 91.9% | 91.9% | 358_359ins108 |
| 14 | human | 8463 | TEAD2 | TEA domain transcription fa... | NM_001256662.2 | 70.2% | 70.2% | 0_1ins393;73_81delCAGGTGGTC |
| 15 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_006723429.2 | 57.1% | 55.4% | (many diffs) |
| 16 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527406.3 | 46.7% | 45.4% | (many diffs) |
| 17 | human | 8463 | TEAD2 | TEA domain transcription fa... | XM_011527405.3 | 46.4% | 45.1% | (many diffs) |
| 18 | mouse | 21677 | Tead2 | TEA domain family member 2 | NM_001285498.1 | 85.7% | 93.2% | (many diffs) |
| 19 | mouse | 21677 | Tead2 | TEA domain family member 2 | NM_011565.2 | 85.7% | 93.2% | (many diffs) |
| 20 | mouse | 21677 | Tead2 | TEA domain family member 2 | XM_006540777.2 | 85.7% | 93.2% | (many diffs) |
| 21 | mouse | 21677 | Tead2 | TEA domain family member 2 | NM_001285500.1 | 79.2% | 85.4% | (many diffs) |
| 22 | mouse | 21677 | Tead2 | TEA domain family member 2 | XM_011250842.1 | 48.9% | 52.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1407
- ORF length:
- 1341
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGAACCCCGG GCTGGGGCCG CCCTGGACGA TGGCAGCGGC TGGACGGGCA 121 GTGAGGAAGG CAGTGAGGAG GGTACCGGCG GCAGTGAGGG GGCTGGGGGT GACGGGGGCC 181 CGGATGCAGA GGGGGTGTGG AGCCCAGACA TTGAGCAGAG CTTCCAGGAG GCCCTGGCCA 241 TCTATCCACC CTGCGGCCGC CGGAAAATAA TTTTGTCTGA TGAAGGCAAG ATGTATGGTC 301 GGAATGAACT GATCGCCCGC TACATCAAGC TGAGAACGGG GAAGACCCGA ACTCGAAAAC 361 AGGTTTCTAG TCACATCCAG GTTTTGGCCC GAAGGAAATC AAGGGAAATC CAGTCCAAGT 421 TGAAGGACCA GGTTTCCAAG GACAAGGCTT TCCAGACAAT GGCAACCATG TCCTCTGCCC 481 AGCTCATCTC CGCGCCTTCT CTGCAGGCCA AACTGGGTCC CACTGGTCCT CAGGCCTCTG 541 AGCTTTTCCA GTTTTGGTCT GGAGGATCTG GGCCCCCCTG GAATGTTCCA GATGTGAAGC 601 CATTCTCACA GACACCGTTC ACCTTGTCAC TGACTCCCCC ATCTACTGAC CTCCCAGGGT 661 ACGAGCCCCC CCAAGCCCTC TCACCCCTGC CCCCACCTAC CCCATCGCCC CCAGCCTGGC 721 AGGCTCGGGG CCTGGGCACC GCCCGGTTGC AGCTGGTAGA GTTCTCAGCC TTCGTGGAAC 781 CGCCAGATGC AGTTGATTCT TACCAGAGGC ACCTGTTCGT GCACATCAGC CAGCACTGCC 841 CCAGCCCCGG AGCGCCGCCG CTCGAGAGTG TGGACGTCCG GCAGATCTAC GACAAATTCC 901 CTGAGAAAAA GGGTGGCCTC CGAGAGCTAT ATGATCGTGG CCCCCCCCAT GCCTTCTTCC 961 TGGTCAAGTT CTGGGCGGAC CTGAACTGGG GCCCAAGTGG TGAGGAGGCA GGGGCCGGTG 1021 GCAGCATCAG CAGTGGTGGC TTCTACGGAG TGAGCAGCCA GTATGAGAGC CTGGAACACA 1081 TGACCCTCAC CTGTTCCTCC AAGGTCTGCT CTTTTGGCAA GCAGGTGGTG GAGAAGGTGG 1141 AGACGGAACG GGCCCAGCTG GAGGACGGCA GATTTGTGTA CCGCCTGCTG CGCTCGCCCA 1201 TGTGCGAGTA CCTGGTGAAT TTCTTGCACA AGTTGCGGCA GCTGCCTGAG CGATACATGA 1261 TGAACAGCGT CCTGGAAAAC TTCACCATCC TCCAGGTGGT GACAAACAGA GACACCCAGG 1321 AACTGCTGCT CTGCACCGCC TATGTCTTCG AGGTCTCCAC CAGCGAGCGT GGGGCCCAGC 1381 ATCACATTTA CCGCCTGGTC AGGGACTGCC CAACTTTCTT GTACAAAGTt ggcattataa 1441 gaaagcattg cttatcaatt tgttgcaacg aac