Transcript: Mouse NM_001285498.1

Mus musculus TEA domain family member 2 (Tead2), transcript variant 1, mRNA.

Source:
NCBI, updated 2017-06-26
Taxon:
Mus musculus (mouse)
Gene:
Tead2 (21677)
Length:
2157
CDS:
129..1466

Additional Resources:

NCBI RefSeq record:
NM_001285498.1
NBCI Gene record:
Tead2 (21677)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001285498.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000374225 GACGTCACAACCCGAAGATAA pLKO_005 1912 3UTR 100% 13.200 18.480 N Tead2 n/a
2 TRCN0000085900 CGAACTCATTGCCCGTTACAT pLKO.1 368 CDS 100% 5.625 7.875 N Tead2 n/a
3 TRCN0000331769 CGAACTCATTGCCCGTTACAT pLKO_005 368 CDS 100% 5.625 7.875 N Tead2 n/a
4 TRCN0000085902 CTCGAAGGAAATCGAGAGAAA pLKO.1 451 CDS 100% 0.495 0.693 N Tead2 n/a
5 TRCN0000301800 CTCGAAGGAAATCGAGAGAAA pLKO_005 451 CDS 100% 0.495 0.693 N Tead2 n/a
6 TRCN0000085901 GCTGATAGAGTTCTCAGCGTT pLKO.1 815 CDS 100% 0.264 0.370 N Tead2 n/a
7 TRCN0000085899 GCGGCAGATCTACGACAAATT pLKO.1 941 CDS 100% 13.200 9.240 N Tead2 n/a
8 TRCN0000331766 GCGGCAGATCTACGACAAATT pLKO_005 941 CDS 100% 13.200 9.240 N Tead2 n/a
9 TRCN0000374224 TGCTTCCCACGTGTCTCATAT pLKO_005 1855 3UTR 100% 13.200 9.240 N Tead2 n/a
10 TRCN0000085898 CCTCTTAGAAAGGAACCGGAA pLKO.1 1609 3UTR 100% 2.160 1.512 N Tead2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001285498.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01933 pDONR223 100% 85.7% 93.2% None (many diffs) n/a
2 ccsbBroad304_01933 pLX_304 0% 85.7% 93.2% V5 (many diffs) n/a
3 TRCN0000478936 GGACGTCCGAAGGAGACCATATTC pLX_317 31.9% 85.7% 93.2% V5 (many diffs) n/a
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