Construct: ORF ccsbBroadEn_01938

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007477.1_s300c1, BRDN0000455685
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GEMIN2 (8487)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8487 GEMIN2 gem nuclear organelle assoc... NM_003616.2 100% 100%
2 human 8487 GEMIN2 gem nuclear organelle assoc... NM_001009182.1 94.6% 94.6% 519_520ins45
3 human 8487 GEMIN2 gem nuclear organelle assoc... NM_001009183.1 89.2% 88.5% 745_746insA;747_748ins25;750_751ins64
4 human 8487 GEMIN2 gem nuclear organelle assoc... XM_017021709.1 83.9% 83.2% (many diffs)
5 human 8487 GEMIN2 gem nuclear organelle assoc... XM_024449731.1 52.1% 52.1% 0_1ins402
6 mouse 66603 Gemin2 gem nuclear organelle assoc... NM_025656.5 85.8% 90.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
909
ORF length:
840
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCGCCGAGCG GAACTGGCTG GTTTGAAAAC CATGGCGTGG GTACCAGCGG
121AGTCCGCAGT GGAAGAGTTG ATGCCTCGGC TATTGCCGGT AGAGCCTTGC GACTTGACGG
181AAGGTTTCGA TCCCTCGGTA CCCCCGAGGA CGCCTCAGGA ATACCTGAGG CGGGTCCAGA
241TCGAAGCAGC TCAATGTCCA GATGTTGTGG TAGCTCAAAT TGACCCAAAG AAGTTGAAAA
301GGAAGCAAAG TGTGAATATT TCTCTTTCAG GATGCCAACC CGCCCCTGAA GGTTATTCCC
361CAACACTTCA ATGGCAACAG CAACAAGTGG CACAGTTTTC AACTGTTCGA CAGAATGTGA
421ACAAACATAG AAGTCACTGG AAATCACAAC AGTTGGATAG TAATGTGACA ATGCCAAAAT
481CTGAAGATGA AGAAGGCTGG AAGAAATTTT GTCTGGGTGA AAAGTTATGT GCTGACGGGG
541CTGTTGGACC AGCCACAAAT GAAAGTCCTG GAATAGATTA TGTACAAATT GGTTTTCCTC
601CCTTGCTTAG TATTGTTAGC AGAATGAATC AGGCAACAGT AACTAGTGTC TTGGAATATC
661TGAGTAATTG GTTTGGAGAA AGAGACTTTA CTCCAGAATT GGGAAGATGG CTTTATGCTT
721TATTGGCTTG TCTTGAAAAG CCTTTGTTAC CTGAGGCTCA TTCACTGATT CGGCAGCTTG
781CAAGAAGGTG CTCTGAAGTG AGGCTCTTAG TGGATAGCAA AGATGATGAG AGGGTTCCTG
841CTTTGAATTT ATTAATCTGC TTGGTTAGCA GGTATTTTGA CCAACGTGAT TTAGCTGATG
901AGCCATCTTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
961tttgttgcaa cgaac

Download FASTA (ORF) (Full)