Construct: ORF ccsbBroadEn_01948
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003215.1_s300c1, BRDN0000387562
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GAS7 (8522)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8522 | GAS7 | growth arrest specific 7 | NM_001130831.2 | 100% | 100% | |
| 2 | human | 8522 | GAS7 | growth arrest specific 7 | XM_005256831.4 | 100% | 100% | |
| 3 | human | 8522 | GAS7 | growth arrest specific 7 | XM_005256832.4 | 100% | 100% | |
| 4 | human | 8522 | GAS7 | growth arrest specific 7 | XM_011524044.3 | 100% | 100% | |
| 5 | human | 8522 | GAS7 | growth arrest specific 7 | XM_017025239.2 | 100% | 100% | |
| 6 | human | 8522 | GAS7 | growth arrest specific 7 | NM_201432.2 | 99% | 99% | 1_12del |
| 7 | human | 8522 | GAS7 | growth arrest specific 7 | XM_017025241.2 | 91.7% | 76.8% | 1_17del;207_208ins86 |
| 8 | human | 8522 | GAS7 | growth arrest specific 7 | XM_017025240.2 | 90% | 77.9% | 1_41del;231_232ins86 |
| 9 | human | 8522 | GAS7 | growth arrest specific 7 | NM_201433.2 | 86.5% | 86.5% | 1_192del |
| 10 | human | 8522 | GAS7 | growth arrest specific 7 | XM_005256833.4 | 85.6% | 79.8% | 0_1ins91;99_100ins86 |
| 11 | human | 8522 | GAS7 | growth arrest specific 7 | XM_005256834.4 | 85.6% | 79.8% | 0_1ins91;99_100ins86 |
| 12 | human | 8522 | GAS7 | growth arrest specific 7 | XM_005256835.4 | 85.6% | 79.8% | 0_1ins91;99_100ins86 |
| 13 | human | 8522 | GAS7 | growth arrest specific 7 | XM_017025242.2 | 85.6% | 79.8% | 0_1ins91;99_100ins86 |
| 14 | human | 8522 | GAS7 | growth arrest specific 7 | NM_003644.3 | 77.6% | 77.2% | (many diffs) |
| 15 | mouse | 14457 | Gas7 | growth arrest specific 7 | NM_001277079.1 | 91.2% | 97.5% | (many diffs) |
| 16 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_017314262.1 | 91.2% | 97.5% | (many diffs) |
| 17 | mouse | 14457 | Gas7 | growth arrest specific 7 | NM_001109657.3 | 90.3% | 96.6% | (many diffs) |
| 18 | mouse | 14457 | Gas7 | growth arrest specific 7 | NM_008088.5 | 89.3% | 95.4% | (many diffs) |
| 19 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532205.3 | 88.4% | 94.5% | (many diffs) |
| 20 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532208.3 | 79.3% | 83.8% | (many diffs) |
| 21 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532202.1 | 78.9% | 84.4% | (many diffs) |
| 22 | mouse | 14457 | Gas7 | growth arrest specific 7 | NM_001277080.1 | 77.8% | 78.1% | (many diffs) |
| 23 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532209.1 | 77.8% | 78.1% | (many diffs) |
| 24 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532210.2 | 77.8% | 78.1% | (many diffs) |
| 25 | mouse | 14457 | Gas7 | growth arrest specific 7 | XM_006532211.2 | 77% | 78.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1302
- ORF length:
- 1236
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGT CCCCCCTCCG CCGGGAGAAG AAAGCCAGAC GGTCATCCTT CCACCTGGCT 121 GGCAGAGCTA CCTGTCGCCT CAGGGCCGGC GGTACTATGT CAACACGACC ACCAATGAGA 181 CCACCTGGGA ACGTCCCAGC AGTTCTCCTG GGATTCCAGC CAGCCCTGGC TCTCACAGGA 241 GCTCTCTGCC TCCAACAGTG AATGGATACC ACGCATCAGG GACCCCAGCG CACCCTCCAG 301 AGACTGCCCA CATGAGTGTC CGAAAATCCA CCGGTGATTC CCAGAACCTG GGATCCTCAT 361 CGCCAAGCAA AAAGCAGAGC AAGGAAAACA CCATCACAAT AAACTGTGTG ACGTTCCCTC 421 ACCCAGACAC GATGCCGGAA CAGCAGCTGC TGAAACCAAC CGAGTGGAGC TACTGCGACT 481 ACTTCTGGGC TGATAAGAAG GACCCCCAAG GCAACGGCAC CGTGGCTGGG TTTGAACTAC 541 TGCTCCAGAA ACAGCTGAAG GGCAAACAAA TGCAGAAGGA AATGTCAGAA TTCATCCGGG 601 AAAGGATAAA GATTGAAGAA GACTATGCGA AGAACTTAGC TAAGCTCTCT CAGAACTCCT 661 TGGCTTCACA GGAGGAAGGC TCCTTGGGAG AGGCGTGGGC CCAGGTGAAG AAGAGCCTGG 721 CGGACGAAGC AGAAGTTCAC CTCAAGTTCT CTGCCAAGCT TCACAGCGAG GTGGAGAAGC 781 CCCTGATGAA CTTCCGTGAG AACTTCAAGA AAGACATGAA GAAGTGCGAC CACCACATTG 841 CCGACCTTCG CAAGCAGCTC GCCAGCCGCT ATGCCTCGGT GGAGAAGGCC CGGAAAGCCC 901 TCACAGAGCG GCAGAGAGAC CTGGAGATGA AGACCCAGCA GCTGGAGATC AAGCTGAGCA 961 ACAAGACAGA GGAGGACATC AAGAAGGCGC GGAGAAAGTC CACACAGGCT GGAGACGACC 1021 TCATGCGCTG TGTGGATCTC TACAACCAGG CCCAGTCCAA ATGGTTTGAA GAGATGGTGA 1081 CCACCACATT GGAGCTAGAG CGGCTGGAGG TGGAGAGGGT AGAGATGATC CGGCAGCACC 1141 TGTGCCAGTA CACGCAGCTG CGGCATGAAA CAGACATGTT CAACCAAAGC ACAGTCGAGC 1201 CCGTGGATCA GCTGCTTCGA AAAGTGGACC CGGCCAAAGA CAGGGAGCTG TGGGTCAGAG 1261 AGCACAAGAC GGGCAACATC CGCCCTGTGG ACATGGAGAT CTACCCAACT TTCTTGTACA 1321 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac