Construct: ORF ccsbBroadEn_01998
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001138.1_s300c1, BRDN0000457459
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ABCC3 (8714)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8714 | ABCC3 | ATP binding cassette subfam... | NM_003786.4 | 100% | 100% | |
| 2 | human | 8714 | ABCC3 | ATP binding cassette subfam... | NM_001144070.2 | 36.4% | 35.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4650
- ORF length:
- 4581
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACGCCCTG TGCGGTTCCG GGGAGCTCGG CTCCAAGTTC TGGGACTCCA 121 ACCTGTCTGT GCACACAGAA AACCCGGACC TCACTCCCTG CTTCCAGAAC TCCCTGCTGG 181 CCTGGGTGCC CTGCATCTAC CTGTGGGTCG CCCTGCCCTG CTACTTGCTC TACCTGCGGC 241 ACCATTGTCG TGGCTACATC ATCCTCTCCC ACCTGTCCAA GCTCAAGATG GTCCTGGGTG 301 TCCTGCTGTG GTGCGTCTCC TGGGCGGACC TTTTTTACTC CTTCCATGGC CTGGTCCATG 361 GCCGGGCCCC TGCCCCTGTT TTCTTTGTCA CCCCCTTGGT GGTGGGGGTC ACCATGCTGC 421 TGGCCACCCT GCTGATACAG TATGAGCGGC TGCAGGGCGT ACAGTCTTCG GGGGTCCTCA 481 TTATCTTCTG GTTCCTGTGT GTGGTCTGCG CCATCGTCCC ATTCCGCTCC AAGATCCTTT 541 TAGCCAAGGC AGAGGGTGAG ATCTCAGACC CCTTCCGCTT CACCACCTTC TACATCCACT 601 TTGCCCTGGT ACTCTCTGCC CTCATCTTGG CCTGCTTCAG GGAGAAACCT CCATTTTTCT 661 CCGCAAAGAA TGTCGACCCT AACCCCTACC CTGAGACCAG CGCTGGCTTT CTCTCCCGCC 721 TGTTTTTCTG GTGGTTCACA AAGATGGCCA TCTATGGCTA CCGGCATCCC CTGGAGGAGA 781 AGGACCTCTG GTCCCTAAAG GAAGAGGACA GATCCCAGAT GGTGGTGCAG CAGCTGCTGG 841 AGGCATGGAG GAAGCAGGAA AAGCAGACGG CACGACACAA GGCTTCAGCA GCACCTGGGA 901 AAAATGCCTC CGGCGAGGAC GAGGTGCTGC TGGGTGCCCG GCCCAGGCCC CGGAAGCCCT 961 CCTTCCTGAA GGCCCTGCTG GCCACCTTCG GCTCCAGCTT CCTCATCAGT GCCTGCTTCA 1021 AGCTTATCCA GGACCTGCTC TCCTTCATCA ATCCACAGCT GCTCAGCATC CTGATCAGGT 1081 TTATCTCCAA CCCCATGGCC CCCTCCTGGT GGGGCTTCCT GGTGGCTGGG CTGATGTTCC 1141 TGTGCTCCAT GATGCAGTCG CTGATCTTAC AACACTATTA CCACTACATC TTTGTGACTG 1201 GGGTGAAGTT TCGTACTGGG ATCATGGGTG TCATCTACAG GAAGGCTCTG GTTATCACCA 1261 ACTCAGTCAA ACGTGCGTCC ACTGTGGGGG AAATTGTCAA CCTCATGTCA GTGGATGCCC 1321 AGCGCTTCAT GGACCTTGCC CCCTTCCTCA ATCTGCTGTG GTCAGCACCC CTGCAGATCA 1381 TCCTGGCGAT CTACTTCCTC TGGCAGAACC TAGGTCCCTC TGTCCTGGCT GGAGTCGCTT 1441 TCATGGTCTT GCTGATTCCA CTCAACGGAG CTGTGGCCGT GAAGATGCGC GCCTTCCAGG 1501 TAAAGCAAAT GAAATTGAAG GACTCGCGCA TCAAGCTGAT GAGTGAGATC CTGAACGGCA 1561 TCAAGGTGCT GAAGCTGTAC GCCTGGGAGC CCAGCTTCCT GAAGCAGGTG GAGGGCATCA 1621 GGCAGGGTGA GCTCCAGCTG CTGCGCACGG CGGCCTACCT CCACACCACA ACCACCTTCA 1681 CCTGGATGTG CAGCCCCTTC CTGGTGACCC TGATCACCCT CTGGGTGTAC GTGTACGTGG 1741 ACCCAAACAA TGTGCTGGAC GCCGAGAAGG CCTTTGTGTC TGTGTCCTTG TTTAATATCT 1801 TAAGACTTCC CCTCAACATG CTGCCCCAGT TAATCAGCAA CCTGACTCAG GCCAGTGTGT 1861 CTCTGAAACG GATCCAGCAA TTCCTGAGCC AAGAGGAACT TGACCCCCAG AGTGTGGAAA 1921 GAAAGACCAT CTCCCCAGGC TATGCCATCA CCATACACAG TGGCACCTTC ACCTGGGCCC 1981 AGGACCTGCC CCCCACTCTG CACAGCCTAG ACATCCAGGT CCCGAAAGGG GCACTGGTGG 2041 CCGTGGTGGG GCCTGTGGGC TGTGGGAAGT CCTCCCTGGT GTCTGCCCTG CTGGGAGAGA 2101 TGGAGAAGCT AGAAGGCAAA GTGCACATGA AGGGCTCCGT GGCCTATGTG CCCCAGCAGG 2161 CATGGATCCA GAACTGCACT CTTCAGGAAA ACGTGCTTTT CGGCAAAGCC CTGAACCCCA 2221 AGCGCTACCA GCAGACTCTG GAGGCCTGTG CCTTGCTAGC TGACCTGGAG ATGCTGCCTG 2281 GTGGGGATCA GACAGAGATT GGAGAGAAGG GCATTAACCT GTCTGGGGGC CAGCGGCAGC 2341 GGGTCAGTCT GGCTCGAGCT GTTTACAGTG ATGCCGATAT TTTCTTGCTG GATGACCCAC 2401 TGTCCGCGGT GGACTCTCAT GTGGCCAAGC ACATCTTTGA CCACGTCATC GGGCCAGAAG 2461 GCGTGCTGGC AGGCAAGACG CGAGTGCTGG TGACGCACGG CATTAGCTTC CTGCCCCAGA 2521 CAGACTTCAT CATTGTGCTA GCTGATGGAC AGGTGTCTGA GATGGGCCCG TACCCAGCCC 2581 TGCTGCAGCG CAACGGCTCC TTTGCCAACT TTCTCTGCAA CTATGCCCCC GATGAGGACC 2641 AAGGGCACCT GGAGGACAGC TGGACCGCGT TGGAAGGTGC AGAGGATAAG GAGGCACTGC 2701 TGATTGAAGA CACACTCAGC AACCACACGG ATCTGACAGA CAATGATCCA GTCACCTATG 2761 TGGTCCAGAA GCAGTTTATG AGACAGCTGA GTGCCCTGTC CTCAGATGGG GAGGGACAGG 2821 GTCGGCCTGT ACCCCGGAGG CACCTGGGTC CATCAGAGAA GGTGCAGGTG ACAGAGGCGA 2881 AGGCAGATGG GGCACTGACC CAGGAGGAGA AAGCAGCCAT TGGCACTGTG GAGCTCAGTG 2941 TGTTCTGGGA TTATGCCAAG GCCGTGGGGC TCTGTACCAC GCTGGCCATC TGTCTCCTGT 3001 ATGTGGGTCA AAGTGCGGCT GCCATTGGAG CCAATGTGTG GCTCAGTGCC TGGACAAATG 3061 ATGCCATGGC AGACAGTAGA CAGAACAACA CTTCCCTGAG GCTGGGCGTC TATGCTGCTT 3121 TAGGAATTCT GCAAGGGTTC TTGGTGATGC TGGCAGCCAT GGCCATGGCA GCGGGTGGCA 3181 TCCAGGCTGC CCGTGTGTTG CACCAGGCAC TGCTGCACAA CAAGATACGC TCGCCACAGT 3241 CCTTCTTTGA CACCACACCA TCAGGCCGCA TCCTGAACTG CTTCTCCAAG GACATCTATG 3301 TCGTTGATGA GGTTCTGGCC CCTGTCATCC TCATGCTGCT CAATTCCTTC TTCAACGCCA 3361 TCTCCACTCT TGTGGTCATC ATGGCCAGCA CGCCGCTCTT CACTGTGGTC ATCCTGCCCC 3421 TGGCTGTGCT CTACACCTTA GTGCAGCGCT TCTATGCAGC CACATCACGG CAACTGAAGC 3481 GGCTGGAATC AGTCAGCCGC TCACCTATCT ACTCCCACTT TTCGGAGACA GTGACTGGTG 3541 CCAGTGTCAT CCGGGCCTAC AACCGCAGCC GGGATTTTGA GATCATCAGT GATACTAAGG 3601 TGGATGCCAA CCAGAGAAGC TGCTACCCCT ACATCATCTC CAACCGGTGG CTGAGCATCG 3661 GAGTGGAGTT CGTGGGGAAC TGCGTGGTGC TCTTTGCTGC ACTATTTGCC GTCATCGGGA 3721 GGAGCAGCCT GAACCCGGGG CTGGTGGGCC TTTCTGTGTC CTACTCCTTG CAGGTGACAT 3781 TTGCTCTGAA CTGGATGATA CGAATGATGT CAGATTTGGA ATCTAACATC GTGGCTGTGG 3841 AGAGGGTCAA GGAGTACTCC AAGACAGAGA CAGAGGCGCC CTGGGTGGTG GAAGGCAGCC 3901 GCCCTCCCGA AGGTTGGCCC CCACGTGGGG AGGTGGAGTT CCGGAATTAT TCTGTGCGCT 3961 ACCGGCCGGG CCTAGACCTG GTGCTGAGAG ACCTGAGTCT GCATGTGCAC GGTGGCGAGA 4021 AGGTGGGGAT CGTGGGCCGC ACTGGGGCTG GCAAGTCTTC CATGACCCTT TGCCTGTTCC 4081 GCATCCTGGA GGCGGCAAAG GGTGAAATCC GCATTGATGG CCTCAATGTG GCAGACATCG 4141 GCCTCCATGA CCTGCGCTCT CAGCTGACCA TCATCCCGCA GGACCCCATC CTGTTCTCGG 4201 GGACCCTGCG CATGAACCTG GACCCCTTCG GCAGCTACTC AGAGGAGGAC ATTTGGTGGG 4261 CTTTGGAGCT GTCCCACCTG CACACGTTTG TGAGCTCCCA GCCGGCAGGC CTGGACTTCC 4321 AGTGCTCAGA GGGCGGGGAG AATCTCAGCG TGGGCCAGAG GCAGCTCGTG TGCCTGGCCC 4381 GAGCCCTGCT CCGCAAGAGC CGCATCCTGG TTTTAGACGA GGCCACAGCT GCCATCGACC 4441 TGGAGACTGA CAACCTCATC CAGGCTACCA TCCGCACCCA GTTTGATACC TGCACTGTCC 4501 TGACCATCGC ACACCGGCTT AACACTATCA TGGACTACAC CAGGGTCCTG GTCCTGGACA 4561 AAGGAGTAGT AGCTGAATTT GATTCTCCAG CCAACCTCAT TGCAGCTAGA GGCATCTTCT 4621 ACGGGATGGC CAGAGATGCT GGACTTGCCT TGCCAACTTT CTTGTACAAA GTTGGcatta 4681 taagaaagca ttgcttatca atttgttgca acgaac