Construct: ORF ccsbBroadEn_02028
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005723.1_s300c1, BRDN0000388823
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SOCS2 (8835)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_001270467.2 | 100% | 100% | |
| 2 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_001270468.2 | 100% | 100% | |
| 3 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_001270469.2 | 100% | 100% | |
| 4 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_001270470.1 | 100% | 100% | |
| 5 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_001270471.2 | 100% | 100% | |
| 6 | human | 8835 | SOCS2 | suppressor of cytokine sign... | NM_003877.5 | 100% | 100% | |
| 7 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_011538936.1 | 96.7% | 96.5% | 592_593delCCinsGT;595_612del |
| 8 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_011538935.1 | 93% | 92.9% | 592A>G;594_636delinsA |
| 9 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_011538929.1 | 90% | 89.5% | 589_596delCAGTTTTT;603_660del |
| 10 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020155.2 | 89% | 89.1% | 594_666delinsA |
| 11 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020147.1 | 81.3% | 81.4% | 594_729delinsA |
| 12 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020148.2 | 81.3% | 81.4% | 594_729delinsA |
| 13 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020149.1 | 81.3% | 81.4% | 594_729delinsA |
| 14 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020151.1 | 81.3% | 81.4% | 594_729delinsA |
| 15 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XM_017020152.1 | 81.3% | 81.4% | 594_729delinsA |
| 16 | human | 8835 | SOCS2 | suppressor of cytokine sign... | XR_944810.1 | 31.6% | 1_415del;1007_1008delCCinsGT;1010_1873del | |
| 17 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | NM_001168655.1 | 90.9% | 93.9% | (many diffs) |
| 18 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | NM_001168656.1 | 90.9% | 93.9% | (many diffs) |
| 19 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | NM_001168657.1 | 90.9% | 93.9% | (many diffs) |
| 20 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | NM_007706.4 | 90.9% | 93.9% | (many diffs) |
| 21 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_011243410.2 | 90.9% | 93.9% | (many diffs) |
| 22 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313902.1 | 90% | 93% | (many diffs) |
| 23 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_006513517.3 | 86.7% | 89.8% | (many diffs) |
| 24 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313901.1 | 86.7% | 89.8% | (many diffs) |
| 25 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_006513515.3 | 84.5% | 87.3% | (many diffs) |
| 26 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_011243406.2 | 72.6% | 74.8% | (many diffs) |
| 27 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313896.1 | 67.2% | 69.2% | (many diffs) |
| 28 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313897.1 | 67.2% | 69.2% | (many diffs) |
| 29 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313898.1 | 67.2% | 69.2% | (many diffs) |
| 30 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313899.1 | 67.2% | 69.2% | (many diffs) |
| 31 | mouse | 216233 | Socs2 | suppressor of cytokine sign... | XM_017313900.1 | 67.2% | 69.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 660
- ORF length:
- 594
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CCTGCGGTGC CTTGAGCCCT CCGGGAATGG CGGGGAAGGG ACGCGGAGCC 121 AGTGGGGGAC CGCGGGGTCG GCGGAGGAGC CATCCCCGCA GGCGGCGCGT CTGGCGAAGG 181 CCCTGCGGGA GCTCGGTCAG ACAGGATGGT ACTGGGGAAG TATGACTGTT AATGAAGCCA 241 AAGAGAAATT AAAAGAGGCA CCAGAAGGAA CTTTCTTGAT TAGAGATAGC TCGCATTCAG 301 ACTACCTACT AACAATATCT GTTAAAACAT CAGCTGGACC AACTAATCTT CGAATCGAAT 361 ACCAAGACGG AAAATTCAGA TTGGACTCTA TCATATGTGT CAAATCCAAG CTTAAACAAT 421 TTGACAGTGT GGTTCATCTG ATCGACTACT ATGTTCAGAT GTGCAAGGAT AAGCGGACAG 481 GTCCAGAAGC CCCCCGGAAC GGCACTGTTC ACCTTTATCT GACCAAACCG CTCTACACGT 541 CAGCACCATC TCTGCAGCAT CTCTGTAGGC TCACCATTAA CAAATGTACC GGTGCCATCT 601 GGGGACTGCC TTTACCAACA AGACTAAAAG ATTACTTGGA AGAATATAAA TTCCAGGTAT 661 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 721 acgaac