Transcript: Human XM_017020152.1

PREDICTED: Homo sapiens suppressor of cytokine signaling 2 (SOCS2), transcript variant X5, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
SOCS2 (8835)
Length:
2315
CDS:
489..1220

Additional Resources:

NCBI RefSeq record:
XM_017020152.1
NBCI Gene record:
SOCS2 (8835)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017020152.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000057058 CGCATTCAGACTACCTACTAA pLKO.1 715 CDS 100% 5.625 7.875 N SOCS2 n/a
2 TRCN0000057062 GTTCACCTTTATCTGACCAAA pLKO.1 930 CDS 100% 4.950 6.930 N SOCS2 n/a
3 TRCN0000057061 CCAACTAATCTTCGAATCGAA pLKO.1 762 CDS 100% 3.000 4.200 N SOCS2 n/a
4 TRCN0000416957 TGAAGCCAAAGAGAAATTAAA pLKO_005 656 CDS 100% 15.000 10.500 N Socs2 n/a
5 TRCN0000057060 CAGAAGGAACTTTCTTGATTA pLKO.1 685 CDS 100% 13.200 9.240 N SOCS2 n/a
6 TRCN0000067360 GCCTTTACCAACAAGACTAAA pLKO.1 1031 CDS 100% 13.200 9.240 N Socs2 n/a
7 TRCN0000413051 TCAGATTGGACTCTATCATAT pLKO_005 799 CDS 100% 13.200 9.240 N SOCS2 n/a
8 TRCN0000057059 GTTCATCTGATCGACTACTAT pLKO.1 855 CDS 100% 5.625 3.938 N SOCS2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017020152.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02028 pDONR223 100% 81.3% 81.4% None 594_729delinsA n/a
2 ccsbBroad304_02028 pLX_304 0% 81.3% 81.4% V5 594_729delinsA n/a
3 TRCN0000473370 CTTGGCGAGCCTTGCCTCTACGGC pLX_317 91.2% 81.3% 81.4% V5 594_729delinsA n/a
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