Construct: ORF ccsbBroadEn_02109
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014315.1_s300c1, BRDN0000393832
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- XPR1 (9213)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_001135669.2 | 100% | 100% | |
| 2 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_004736.4 | 90.6% | 90.6% | 1304_1498del |
| 3 | human | 9213 | XPR1 | xenotropic and polytropic r... | NM_001328662.2 | 75.2% | 70.9% | (many diffs) |
| 4 | human | 9213 | XPR1 | xenotropic and polytropic r... | NR_137330.2 | 20.7% | 1_180del;1313_1314ins172;1902_8117del | |
| 5 | mouse | 19775 | Xpr1 | xenotropic and polytropic r... | NM_011273.2 | 84% | 87% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1959
- ORF length:
- 1893
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA GTTCGCCGAG CACCTCTCCG CGCACATCAC TCCCGAGTGG AGGAAGCAAT 121 ACATCCAGTA TGAGGCTTTC AAGGATATGC TGTATTCAGC TCAGGACCAG GCACCTTCTG 181 TGGAAGTTAC AGATGAGGAC ACAGTAAAGA GGTATTTTGC CAAGTTTGAA GAGAAGTTTT 241 TCCAAACCTG TGAAAAAGAA CTTGCCAAAA TCAACACATT TTATTCAGAG AAGCTCGCAG 301 AGGCTCAGCG CAGGTTTGCT ACACTTCAGA ATGAGCTTCA GTCATCACTG GATGCACAGA 361 AAGAAAGCAC TGGTGTTACT ACGCTGCGAC AACGCAGAAA GCCAGTCTTC CACTTGTCCC 421 ATGAGGAACG TGTCCAACAT AGAAATATTA AAGACCTTAA ACTGGCCTTC AGTGAGTTCT 481 ACCTCAGTCT AATCCTGCTG CAGAACTATC AGAATCTGAA TTTTACAGGG TTTCGAAAAA 541 TCCTGAAAAA GCATGACAAG ATCCTGGAAA CATCTCGTGG AGCAGATTGG CGAGTGGCTC 601 ACGTAGAGGT GGCCCCATTT TATACATGCA AGAAAATCAA CCAGCTTATC TCTGAAACTG 661 AGGCTGTAGT GACCAATGAA CTTGAAGATG GTGACAGACA AAAGGCTATG AAGCGTTTAC 721 GTGTCCCCCC TTTGGGAGCT GCTCAGCCTG CACCAGCATG GACTACTTTT AGAGTTGGCC 781 TATTTTGTGG AATATTCATT GTACTGAATA TTACCCTTGT GCTTGCCGCT GTATTTAAAC 841 TTGAAACAGA TAGAAGTATA TGGCCCTTGA TAAGAATCTA TCGGGGTGGC TTTCTTCTGA 901 TTGAATTCCT TTTTCTACTG GGCATCAACA CGTATGGTTG GAGACAGGCT GGAGTAAACC 961 ATGTACTCAT CTTTGAACTT AATCCGAGAA GCAATTTGTC TCATCAACAT CTCTTTGAGA 1021 TTGCTGGATT CCTCGGGATA TTGTGGTGCC TGAGCCTTCT GGCATGCTTC TTTGCTCCAA 1081 TTAGTGTCAT CCCCACATAT GTGTATCCAC TTGCCCTTTA TGGATTTATG GTTTTCTTCC 1141 TTATCAACCC CACCAAAACT TTCTACTATA AATCCCGGTT TTGGCTGCTT AAACTGCTGT 1201 TTCGAGTATT TACAGCCCCC TTCCATAAGG TAGGCTTTGC TGATTTCTGG CTGGCGGATC 1261 AGCTGAACAG CCTGTCAGTG ATACTGATGG ACCTGGAATA TATGATCTGC TTCTACAGTT 1321 TGGAGCTCAA ATGGGATGAA AGTAAGGGCC TGTTGCCAAA TAATTCAGAA GAACGAGGTC 1381 ACTCGGACAC TATGGTGTTC TTTTACCTGT GGATTGTCTT TTATATCATC AGTTCCTGCT 1441 ATACCCTCAT CTGGGATCTC AAGATGGACT GGGGTCTCTT CGATAAGAAT GCTGGAGAGA 1501 ACACTTTCCT CCGGGAAGAG ATTGTATACC CCCAAAAAGC CTACTACTAC TGTGCCATAA 1561 TAGAGGATGT GATTCTGCGC TTTGCTTGGA CTATCCAAAT CTCGATTACC TCTACAACTT 1621 TGTTGCCTCA TTCTGGGGAC ATCATTGCTA CTGTCTTTGC CCCACTTGAG GTTTTCCGGC 1681 GATTTGTGTG GAACTTCTTC CGCCTGGAGA ATGAACATCT GAATAACTGT GGTGAATTCC 1741 GTGCTGTGCG GGACATCTCT GTGGCCCCCC TGAACGCAGA TGATCAGACT CTCCTAGAAC 1801 AGATGATGGA CCAGGATGAT GGGGTACGAA ACCGCCAGAA GAATCGGTCA TGGAAGTACA 1861 ACCAGAGCAT ATCCCTGCGC CGGCCTCGCC TCGCTTCTCA ATCCAAGGCT CGTGACACTA 1921 AGGTATTGAT AGAAGACACA GATGATGAAG CTAACACTTG CCCAACTTTC TTGTACAAAG 1981 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac