Construct: ORF ccsbBroadEn_02181

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009384.1_s300c1, BRDN0000398065
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LITAF (9516)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9516 LITAF lipopolysaccharide induced ... NM_001136472.1 100% 100%
2 human 9516 LITAF lipopolysaccharide induced ... NM_004862.3 100% 100%
3 human 9516 LITAF lipopolysaccharide induced ... XM_006720982.3 100% 100%
4 human 9516 LITAF lipopolysaccharide induced ... XM_006720983.4 100% 100%
5 human 9516 LITAF lipopolysaccharide induced ... XM_006720984.4 100% 100%
6 human 9516 LITAF lipopolysaccharide induced ... XM_006720985.3 100% 100%
7 human 9516 LITAF lipopolysaccharide induced ... XM_017023896.1 100% 100%
8 human 9516 LITAF lipopolysaccharide induced ... XM_011522754.3 84.2% 84.2% 1_90del
9 human 9516 LITAF lipopolysaccharide induced ... NM_001136473.1 84.1% 74.7% (many diffs)
10 human 9516 LITAF lipopolysaccharide induced ... NR_024320.1 18.9% 1_134del;618_2543del
11 mouse 56722 Litaf LPS-induced TN factor NM_019980.2 80.6% 85.7% (many diffs)
12 mouse 56722 Litaf LPS-induced TN factor XM_006522427.1 80.6% 85.7% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
552
ORF length:
483
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCGGTTCCA GGACCTTACC AGGCGGCCAC TGGGCCTTCC TCAGCACCAT
121CCGCACCTCC ATCCTATGAA GAGACAGTGG CTGTTAACAG TTATTACCCC ACACCTCCAG
181CTCCCATGCC TGGGCCAACT ACGGGGCTTG TGACGGGGCC TGATGGGAAG GGCATGAATC
241CTCCTTCGTA TTATACCCAG CCAGCGCCCA TCCCCAATAA CAATCCAATT ACCGTGCAGA
301CGGTCTACGT GCAGCACCCC ATCACCTTTT TGGACCGCCC TATCCAAATG TGTTGTCCTT
361CCTGCAACAA GATGATCGTG AGTCAGCTGT CCTATAACGC CGGTGCTCTG ACCTGGCTGT
421CCTGCGGGAG CCTGTGCCTG CTGGGGTGCA TAGCGGGCTG CTGCTTCATC CCCTTCTGCG
481TGGATGCCCT GCAGGACGTG GACCATTACT GTCCCAACTG CAGAGCTCTC CTGGGCACCT
541ACAAGCGTTT GTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat
601caatttgttg caacgaac

Download FASTA (ORF) (Full)