Transcript: Human NM_001136472.1

Homo sapiens lipopolysaccharide induced TNF factor (LITAF), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-08-04
Taxon:
Homo sapiens (human)
Gene:
LITAF (9516)
Length:
2479
CDS:
71..556

Additional Resources:

NCBI RefSeq record:
NM_001136472.1
NBCI Gene record:
LITAF (9516)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001136472.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000013459 GCATGAATCCTCCTTCGTATT pLKO.1 234 CDS 100% 10.800 8.640 N LITAF n/a
2 TRCN0000297833 GCATGAATCCTCCTTCGTATT pLKO_005 234 CDS 100% 10.800 8.640 N LITAF n/a
3 TRCN0000013461 GTGTTGTCCTTCCTGCAACAA pLKO.1 352 CDS 100% 0.495 0.396 N LITAF n/a
4 TRCN0000280394 GTGTTGTCCTTCCTGCAACAA pLKO_005 352 CDS 100% 0.495 0.396 N LITAF n/a
5 TRCN0000013458 GCACACAGATTCACTTTAATT pLKO.1 1102 3UTR 100% 15.000 10.500 N LITAF n/a
6 TRCN0000297834 GCACACAGATTCACTTTAATT pLKO_005 1102 3UTR 100% 15.000 10.500 N LITAF n/a
7 TRCN0000013462 CCTCCATCCTATGAAGAGACA pLKO.1 128 CDS 100% 2.640 1.848 N LITAF n/a
8 TRCN0000013460 GCCCACCTTCATGTCTTCTTT pLKO.1 667 3UTR 100% 5.625 3.375 N LITAF n/a
9 TRCN0000280440 GCCCACCTTCATGTCTTCTTT pLKO_005 667 3UTR 100% 5.625 3.375 N LITAF n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001136472.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02181 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02181 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000473183 GCGCATACCTTTCGCATTTTCCAG pLX_317 50.7% 100% 100% V5 n/a
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