Construct: ORF ccsbBroadEn_02191

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005430.1_s300c1, BRDN0000393562
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
EI24 (9538)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9538 EI24 EI24 autophagy associated t... NM_004879.5 100% 100%
2 human 9538 EI24 EI24 autophagy associated t... XM_011543069.2 100% 100%
3 human 9538 EI24 EI24 autophagy associated t... NM_001290135.2 95.8% 95.8% 42_43ins42
4 human 9538 EI24 EI24 autophagy associated t... NM_001330419.2 77% 66.2% 671_672ins112;786_787ins122
5 human 9538 EI24 EI24 autophagy associated t... XM_011543070.1 77% 66.2% 671_672ins112;786_787ins122
6 human 9538 EI24 EI24 autophagy associated t... NR_110770.2 41.2% (many diffs)
7 human 9538 EI24 EI24 autophagy associated t... NR_110769.2 39.8% 1_167del;209_210ins146;1042_2045del
8 mouse 13663 Ei24 etoposide induced 2.4 mRNA NM_001199494.1 87.8% 93.2% (many diffs)
9 mouse 13663 Ei24 etoposide induced 2.4 mRNA NM_007915.5 87.8% 93.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1086
ORF length:
1020
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TGACAGTGTC AAAACCTTTC TCCAGGACCT TGCCAGAGGA ATCAAAGACT
121CCATCTGGGG TATTTGTACC ATCTCAAAGC TAGATGCTCG AATCCAGCAA AAGAGAGAGG
181AGCAGCGTCG AAGAAGGGCA AGTAGTGTCT TGGCACAGAG AAGAGCCCAG AGTATAGAGC
241GGAAGCAAGA GAGTGAGCCA CGTATTGTTA GTAGAATTTT CCAGTGTTGT GCTTGGAATG
301GTGGAGTGTT CTGGTTCAGT CTCCTCTTGT TTTATCGAGT ATTTATTCCT GTGCTTCAGT
361CGGTAACAGC CCGAATTATC GGTGACCCAT CACTACATGG AGATGTTTGG TCGTGGCTGG
421AATTCTTCCT CACGTCAATT TTCAGTGCTC TTTGGGTGCT CCCCTTGTTT GTGCTTAGCA
481AAGTGGTGAA TGCCATTTGG TTTCAGGATA TAGCTGACCT GGCATTTGAG GTATCAGGGA
541GGAAGCCTCA CCCATTCCCT AGTGTCAGCA AAATAATTGC TGACATGCTC TTCAACCTTT
601TGCTGCAGGC TCTTTTCCTC ATTCAGGGAA TGTTTGTGAG TCTCTTTCCC ATCCATCTTG
661TCGGTCAGCT GGTTAGTCTC CTGCATATGT CCCTTCTCTA CTCACTGTAC TGCTTTGAAT
721ATCGTTGGTT CAATAAAGGA ATTGAAATGC ACCAGCGGTT GTCTAACATA GAAAGGAATT
781GGCCTTACTA CTTTGGGTTT GGTTTGCCCT TGGCTTTTCT CACAGCAATG CAGTCCTCAT
841ATATTATCAG TGGCTGCCTT TTCTCTATCC TCTTTCCTTT ATTCATTATC AGCGCCAATG
901AAGCAAAGAC CCCTGGCAAA GCATATCTCT TCCAGTTGCG CCTCTTCTCC TTGGTGGTCT
961TCTTAAGCAA CAGACTCTTC CACAAGACAG TCTACCTGCA GTCGGCCCTG AGCAGCTCTA
1021CTTCTGCAGA GAAGTTCCCT TCACCGCATC CGTCGCCTGC CAAACTGAAG GCTACTGCAG
1081GTCACTGCCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt
1141gttgcaacga ac

Download FASTA (ORF) (Full)

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