Construct: ORF ccsbBroadEn_02224

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003258.1_s300c1, BRDN0000387461
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A44 (9673)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9673 SLC25A44 solute carrier family 25 me... NM_014655.4 100% 100%
2 human 9673 SLC25A44 solute carrier family 25 me... XM_017002904.2 100% 100%
3 human 9673 SLC25A44 solute carrier family 25 me... XM_017002905.2 100% 100%
4 human 9673 SLC25A44 solute carrier family 25 me... XM_017002906.2 100% 100%
5 human 9673 SLC25A44 solute carrier family 25 me... XM_024451071.1 100% 100%
6 human 9673 SLC25A44 solute carrier family 25 me... NM_001286184.1 97.5% 97.5% 623_646del
7 human 9673 SLC25A44 solute carrier family 25 me... XM_006711657.4 97.5% 97.5% 623_646del
8 human 9673 SLC25A44 solute carrier family 25 me... XM_011510180.1 97.5% 97.5% 623_646del
9 human 9673 SLC25A44 solute carrier family 25 me... XM_011510181.2 97.5% 97.5% 623_646del
10 human 9673 SLC25A44 solute carrier family 25 me... NR_104411.2 12.4% (many diffs)
11 mouse 229517 Slc25a44 solute carrier family 25, m... NM_001145876.2 90% 96.1% (many diffs)
12 mouse 229517 Slc25a44 solute carrier family 25, m... NM_001281795.1 90% 96.1% (many diffs)
13 mouse 229517 Slc25a44 solute carrier family 25, m... NM_178696.5 84.8% 90.6% (many diffs)
14 mouse 229517 Slc25a44 solute carrier family 25, m... XM_006501347.2 67.1% 59.4% (many diffs)
15 mouse 229517 Slc25a44 solute carrier family 25, m... NM_001145877.2 55.9% 60.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1008
ORF length:
942
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA GGACAAACGC AACATCCAGA TCATCGAGTG GGAACACCTG GACAAGAAGA
121AGTTCTACGT GTTTGGTGTG GCAATGACAA TGATGATCCG TGTCAGTGTC TACCCATTCA
181CCCTCATCCG CACCCGGTTG CAAGTTCAGA AGGGGAAGAG CCTCTACCAT GGGACCTTCG
241ATGCCTTCAT CAAGATCCTG CGAGCAGATG GTATCACTGG CCTCTACCGA GGGTTCCTGG
301TCAATACCTT CACCCTCATC TCTGGCCAGT GTTATGTCAC CACTTATGAG CTCACCCGGA
361AGTTTGTAGC TGACTACAGC CAGAGTAACA CAGTCAAATC ACTGGTGGCT GGTGGCTCAG
421CCTCCCTTGT GGCCCAGAGC ATCACAGTGC CCATTGATGT AGTCTCCCAG CACCTGATGA
481TGCAACGCAA GGGTGAGAAA ATGGGCCGCT TTCAGGTGCG GGGGAACCCA GAGGGACAAG
541GGGTAGTTGC CTTTGGCCAA ACCAAGGACA TCATCAGGCA GATCCTGCAG GCTGATGGAC
601TTCGCGGCTT CTATCGAGGC TATGTGGCTT CACTGCTTAC CTATATCCCA AACAGTGCTG
661TCTGGTGGCC CTTCTATCAC TTCTATGCAG AGCAGCTCTC CTACCTGTGT CCTAAGGAGT
721GCCCTCACAT TGTCTTTCAA GCTGTCTCGG GGCCCCTGGC TGCAGCCACT GCCTCCATCC
781TCACCAATCC CATGGATGTC ATACGAACCC GTGTGCAGGT TGAGGGCAAG AACTCCATCA
841TCCTGACCTT CAGACAGCTG ATGGCAGAAG AAGGGCCTTG GGGCCTCATG AAGGGCCTCT
901CGGCCAGAAT CATCTCAGCC ACACCTTCCA CCATTGTCAT TGTGGTGGGC TATGAGAGCC
961TCAAGAAACT CAGCCTCCGA CCTGAGCTGG TGGACTCGAG ACACTGGTAC CCAACTTTCT
1021TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)