Construct: ORF ccsbBroadEn_02225
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006522.1_s300c1, BRDN0000393311
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TTI1 (9675)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9675 | TTI1 | TELO2 interacting protein 1 | NM_001303457.2 | 100% | 100% | |
| 2 | human | 9675 | TTI1 | TELO2 interacting protein 1 | NM_014657.3 | 100% | 100% | |
| 3 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XM_017028148.2 | 95.1% | 93.7% | (many diffs) |
| 4 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_001754440.2 | 85.6% | (many diffs) | |
| 5 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_936662.3 | 85.4% | 1_99del;3186_3311del;3493_3823del | |
| 6 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_001754442.2 | 85.4% | 1_99del;2601_2617del;3384_3824del | |
| 7 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_001754441.2 | 81.8% | 1_99del;2598_2599ins149;3218_3662del | |
| 8 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XM_011529114.2 | 80.5% | 75.6% | 2499_2500ins149;2631_2632ins487 |
| 9 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_244159.4 | 80.3% | 1_99del;2890_2891ins205;3162_3606del | |
| 10 | human | 9675 | TTI1 | TELO2 interacting protein 1 | XR_001754443.2 | 79.9% | (many diffs) | |
| 11 | mouse | 75425 | Tti1 | TELO2 interacting protein 1 | NM_029282.1 | 85.2% | 84.9% | (many diffs) |
| 12 | mouse | 75425 | Tti1 | TELO2 interacting protein 1 | XM_006500332.2 | 85.2% | 84.9% | (many diffs) |
| 13 | mouse | 75425 | Tti1 | TELO2 interacting protein 1 | XM_011239826.2 | 85.2% | 84.9% | (many diffs) |
| 14 | mouse | 75425 | Tti1 | TELO2 interacting protein 1 | XM_006500333.3 | 69.9% | 69.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3333
- ORF length:
- 3267
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC AGTTTTTGAT ACTCCTGAGG AGGCCTTTGG TGTCTTACGT CCAGTCTGTG 121 TTCAGCTCAC AAAGACCCAG ACAGTGGAGA ATGTGGAGCA TCTGCAGACA CGACTACAAG 181 CTGTGAGTGA CAGTGCCCTT CAGGAACTTC AGCAGTACAT CCTCTTCCCT CTGCGATTTA 241 CCCTGAAGAC CCCAGGTCCC AAAAGAGAGC GTTTGATCCA AAGTGTGGTG GAATGCCTCA 301 CATTTGTCCT TTCTTCAACA TGTGTGAAAG AACAGGAGCT TCTCCAGGAA CTCTTTTCAG 361 AACTCTCTGC TTGTCTGTAT TCACCCAGCT CCCAAAAACC TGCGGCTGTG TCCGAGGAGT 421 TGAAATTGGC TGTGATCCAG GGACTTAGCA CATTAATGCA CTCAGCTTAT GGGGACATCA 481 TTCTGACTTT TTATGAGCCC TCCATTCTGC CACGTTTAGG ATTTGCTGTA TCTTTACTGT 541 TAGGCCTTGC AGAACAGGAG AAATCAAAGC AAATTAAAAT TGCTGCCTTA AAATGTTTAC 601 AGGTTCTACT CTTGCAGTGT GATTGTCAGG ACCATCCAAG GTCATTGGAT GAACTTGAAC 661 AAAAGCAGCT GGGGGATTTG TTTGCCTCTT TTTTACCTGG AATCTCAACT GCACTGACCA 721 GGCTTATCAC AGGAGACTTT AAACAAGGTC ACAGCATTGT CGTATCTTCC CTAAAGATCT 781 TTTACAAGAC AGTGAGCTTC ATTATGGCTG ATGAACAGCT CAAAAGAATC TCAAAGGTCC 841 AAGCAAAACC TGCAGTTGAG CACAGAGTAG CAGAGCTGAT GGTTTACAGG GAAGCAGATT 901 GGGTAAAAAA GACTGGCGAC AAGTTGACTA TCCTTATTAA AAAGATAATT GAGTGTGTTT 961 CTGTTCACCC ACACTGGAAG GTGAGACTGG AACTGGTAGA ACTTGTGGAG GACCTTCTTT 1021 TGAAGTGCAG TCAATCATTG GTCGAATGTG CTGGTCCCCT TCTGAAGGCC TTAGTGGGAC 1081 TAGTAAATGA TGAGAGTCCT GAAATCCAAG CCCAGTGCAA TAAAGTTCTG AGACATTTTG 1141 CAGATCAAAA AGTAGTGGTG GGCAACAAAG CCCTCGCTGA CATCTTGTCA GAAAGCCTGC 1201 ATTCCCTTGC CACATCTCTT CCTCGCCTAA TGAACTCCCA AGATGACCAG GGCAAATTCT 1261 CTACTCTTTC CTTGTTACTT GGTTATCTGA AACTCTTGGG CCCAAAAATA AACTTTGTCC 1321 TCAACTCTGT GGCCCATCTC CAGCGGCTTT CCAAAGCACT CATCCAAGTT CTAGAGCTAG 1381 ACGTGGCTGA CATCAAGATT GTTGAGGAAC GGCGTTGGAA CTCTGATGAT CTGAATGCTT 1441 CTCCAAAGAC CTCAGCCACA CAGCCTTGGA ACCGCATCCA GAGGAGATAT TTCCGCTTCT 1501 TCACTGATGA GAGAATCTTC ATGCTCTTGA GGCAGGTTTG TCAGCTACTT GGTTATTATG 1561 GGAATCTTTA TTTGCTTGTG GATCACTTTA TGGAACTTTA CCATCAATCT GTGGTTTACC 1621 GGAAGCAAGC TGCCATGATC CTTAATGAAC TGGTTACAGG GGCTGCTGGG CTGGAGGTTG 1681 AGGATCTTCA CGAAAAACAT ATTAAAACAA ACCCAGAAGA ACTGAGAGAG ATTGTGACAT 1741 CTATACTTGA AGAATACACA AGTCAAGAAA ATTGGTATTT GGTTACCTGT CTTGAAACTG 1801 AGGAAATGGG AGAGGAGCTG ATGATGGAGC ACCCAGGCCT CCAAGCCATC ACGTCTGGTG 1861 AACACACCTG CCAAGTTACA TCTTTTCTAG CCTTCTCAAA GCCAAGTCCC ACTATTTGCT 1921 CCATGAACAG TAACATCTGG CAAATATGCA TTCAGTTGGA AGGAATTGGC CAGTTTGCAT 1981 ATGCACTAGG AAAAGACTTC TGTTTGCTCT TGATGTCAGC CCTTTATCCA GTACTGGAGA 2041 AGGCTGGAGA CCAAACCCTA CTCATTAGTC AGGTGGCTAC CAGCACCATG ATGGACGTTT 2101 GCCGTGCTTG TGGCTACGAC TCCCTGCAGC ACCTGATCAA TCAAAATTCA GACTATTTAG 2161 TGAATGGGAT CTCTTTAAAT CTGCGTCATC TGGCTCTGCA TCCTCATACC CCAAAGGTCC 2221 TGGAAGTCAT GCTGCGGAAC TCAGATGCTA ACCTGCTTCC TTTGGTGGCA GATGTGGTTC 2281 AAGATGTCTT GGCCACCCTG GACCAATTTT ACGATAAGAG AGCTGCTTCC TTTGTCAGCG 2341 TTCTGCATGC TCTGATGGCA GCATTAGCCC AGTGGTTCCC AGACACAGGT AATCTTGGGC 2401 ACCTCCAAGA GCAAAGTTTA GGAGAAGAGG GAAGTCATTT GAACCAAAGA CCAGCAGCTC 2461 TTGAGAAGAG CACCACCACA GCTGAAGACA TCGAACAGTT TTTGCTGAAC TACCTCAAAG 2521 AGAAGGATGT GGCAGATGGA AATGTCTCGG ATTTTGATAA TGAAGAAGAG GAACAGTCAG 2581 TCCCTCCCAA AGTGGATGAG AATGACACCC GTCCAGATGT GGAGCCACCA CTGCCATTGC 2641 AGATCCAAAT AGCCATGGAC GTGATGGAAC GCTGCATCCA CTTGTTGTCA GATAAAAATC 2701 TGCAAATCCG CCTGAAGGTC TTGGATGTGC TGGATCTGTG TGTGGTTGTT CTTCAGTCCC 2761 ACAAAAACCA GCTGCTTCCC TTGGCTCATC AGGCCTGGCC CTCGCTCGTT CACCGACTCA 2821 CACGGGACGC CCCCCTGGCA GTGCTTAGAG CCTTCAAGGT TTTACGTACC CTGGGAAGCA 2881 AGTGTGGTGA CTTTCTTCGC AGCCGGTTCT GCAAAGATGT CCTGCCAAAG CTGGCTGGCT 2941 CCCTAGTCAC CCAGGCCCCC ATCAGTGCCA GGGCTGGACC AGTTTACTCG CACACGCTGG 3001 CCTTCAAGTT GCAGCTGGCT GTCTTACAGG GCCTGGGCCC CCTCTGTGAG AGACTGGACC 3061 TAGGTGAGGG TGACCTGAAT AAAGTGGCTG ATGCCTGCTT GATTTACCTC AGTGTCAAAC 3121 AGCCCGTGAA ATTACAAGAG GCTGCCAGGA GCGTCTTCCT CCACTTGATG AAGGTGGACC 3181 CAGACTCCAC CTGGTTCCTC CTGAACGAGC TTTACTGCCC CGTGCAGTTC ACACCTCCCC 3241 ACCCCAGCCT CCACCCTGTG CAGCTGCACG GGGCCAGCGG GCAGCAGAAC CCCTACACGA 3301 CCAACGTGCT CCAGCTGCTC AAGGAGCTGC AGTGCCCAAC TTTCTTGTAC AAAGTtggca 3361 ttataagaaa gcattgctta tcaatttgtt gcaacgaac