Construct: ORF ccsbBroadEn_02241

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004489.1_s300c1, BRDN0000386638
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TBC1D5 (9779)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349076.1 100% 100%
2 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349077.1 100% 100%
3 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349078.1 100% 100%
4 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349079.1 100% 100%
5 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349080.1 100% 100%
6 human 9779 TBC1D5 TBC1 domain family member 5 NM_014744.2 100% 100%
7 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007557.1 100% 100%
8 human 9779 TBC1D5 TBC1 domain family member 5 NM_001134381.1 97.3% 97.3% 1586_1651del
9 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349073.1 97.3% 97.3% 1586_1651del
10 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349074.1 97.3% 97.3% 1586_1651del
11 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349075.1 97.3% 97.3% 1586_1651del
12 human 9779 TBC1D5 TBC1 domain family member 5 XM_011534281.1 97.3% 97.3% 1586_1651del
13 human 9779 TBC1D5 TBC1 domain family member 5 XM_011534283.3 97.3% 97.3% 1586_1651del
14 human 9779 TBC1D5 TBC1 domain family member 5 XM_011534284.2 97.3% 97.3% 1586_1651del
15 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007552.2 97.3% 97.3% 1586_1651del
16 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007553.2 97.3% 97.3% 1586_1651del
17 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007554.1 97.3% 97.3% 1586_1651del
18 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007555.2 97.3% 97.3% 1586_1651del
19 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007556.1 97.3% 97.3% 1586_1651del
20 human 9779 TBC1D5 TBC1 domain family member 5 XM_024453839.1 97.3% 97.3% 1586_1651del
21 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349081.1 96.6% 95.5% (many diffs)
22 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349087.1 82.8% 82.8% 0_1ins408
23 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349088.1 82.8% 82.8% 0_1ins408
24 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349089.1 82.8% 82.8% 0_1ins408
25 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349090.1 82.8% 82.8% 0_1ins408
26 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349091.1 82.8% 82.8% 0_1ins408
27 human 9779 TBC1D5 TBC1 domain family member 5 XM_024453840.1 82.8% 82.8% 0_1ins408
28 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349082.1 80.6% 80.6% 0_1ins408;1178_1243del
29 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349083.1 80.6% 80.6% 0_1ins408;1178_1243del
30 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349084.1 80.6% 80.6% 0_1ins408;1178_1243del
31 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349085.1 80.6% 80.6% 0_1ins408;1178_1243del
32 human 9779 TBC1D5 TBC1 domain family member 5 NM_001349086.1 80.6% 80.6% 0_1ins408;1178_1243del
33 human 9779 TBC1D5 TBC1 domain family member 5 XM_017007568.1 55.8% 55.8% 1332_1332delAins1054
34 mouse 72238 Tbc1d5 TBC1 domain family, member 5 NM_001285993.1 84.8% 86.8% (many diffs)
35 mouse 72238 Tbc1d5 TBC1 domain family, member 5 NM_028162.4 84.8% 86.8% (many diffs)
36 mouse 72238 Tbc1d5 TBC1 domain family, member 5 NM_001285991.1 82.6% 84.5% (many diffs)
37 mouse 72238 Tbc1d5 TBC1 domain family, member 5 XM_011246640.2 61.2% 59.8% (many diffs)
38 mouse 72238 Tbc1d5 TBC1 domain family, member 5 XM_006524965.3 57.4% 59.2% (many diffs)
39 mouse 72238 Tbc1d5 TBC1 domain family, member 5 XM_006524967.3 47.3% 48% (many diffs)
40 mouse 72238 Tbc1d5 TBC1 domain family, member 5 XM_017317657.1 39.9% 39.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2451
ORF length:
2385
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG
61TTGGCATGTA TCATTCCTTA TCTGAAACTA GACATCCTCT GCAGCCAGAA GAACAAGAAG
121TAGGCATTGA CCCCTTGTCC AGTTACTCTA ACAAGTCTGG AGGAGATTCA AATAAAAATG
181GAAGAAGAAC AAGTTCTACT TTAGACTCTG AAGGGACTTT TAATTCCTAT AGGAAAGAAT
241GGGAAGAACT ATTTGTAAAC AACAATTACT TGGCAACAAT AAGGCAGAAG GGGATTAATG
301GGCAGCTGAG AAGCAGCAGG TTCCGCAGCA TTTGCTGGAA GCTATTTCTT TGTGTTCTTC
361CTCAAGACAA AAGTCAATGG ATAAGTAGAA TTGAAGAATT AAGAGCATGG TATAGCAACA
421TTAAAGAAAT ACATATTACC AACCCGAGGA AGGTTGTTGG CCAACAAGAT TTGATGATCA
481ATAATCCTCT TTCACAGGAT GAAGGGAGTC TTTGGAACAA ATTCTTCCAA GATAAAGAAC
541TTCGATCAAT GATTGAACAA GATGTCAAAA GAACGTTTCC TGAAATGCAG TTTTTCCAGC
601AAGAAAATGT GAGAAAAATT CTTACAGATG TTCTTTTCTG TTATGCCAGA GAAAACGAGC
661AGTTGCTTTA TAAACAGGGC ATGCACGAAC TGTTAGCACC TATAGTCTTT GTCCTTCACT
721GTGACCACCA AGCTTTTCTA CATGCCAGTG AGTCTGCACA GCCCAGTGAG GAAATGAAAA
781CTGTCTTGAA CCCTGAGTAT CTGGAACATG ATGCCTATGC AGTGTTCTCA CAACTTATGG
841AAACTGCTGA ACCTTGGTTT TCAACTTTTG AGCATGATGG TCAGAAGGGG AAAGAAACAC
901TGATGACTCC CATTCCCTTT GCTAGACCAC AAGATTTAGG GCCAACAATT GCTATTGTTA
961CTAAAGTCAA CCAGATCCAG GATCATCTAC TGAAGAAGCA TGATATTGAG CTTTACATGC
1021ACTTGAACAG ACTAGAAATT GCACCACAGA TATATGGGTT AAGGTGGGTG CGGCTGCTAT
1081TTGGACGAGA GTTCCCCCTG CAGGACCTTC TGGTGGTCTG GGATGCCTTG TTTGCAGACG
1141GCCTCAGCCT GGGTTTAGTA GATTATATCT TCGTAGCCAT GTTACTTTAC ATCCGAGATG
1201CTTTGATCTC TAGTAACTAC CAGACCTGTC TCGGCCTTCT GATGCATTAC CCATTCATCG
1261GGGATGTACA CTCACTGATT CTTAAGGCTC TGTTCCTTAG AGATCCAAAG AGAAATCCAA
1321GACCAGTGAC TTATCAATTC CATCCAAATT TAGATTATTA CAAAGCACGA GGAGCAGACC
1381TCATGAATAA AAGCCGGACC AATGCCAAAG GTGCTCCCCT GAATATAAAT AAGGTCTCTA
1441ATAGCCTGAT TAATTTTGGA AGAAAGTTGA TTTCCCCAGC AATGGCTCCA GGCAGTGCAG
1501GTGGCCCTGT ACCTGGAGGC AACAGCAGTA GCTCCTCCTC TGTTGTAATT CCTACCAGGA
1561CCTCAGCAGA GGCCCCAAGC CATCACTTGC AACAGCAACA GCAGCAGCAG AGGCTGATGA
1621AATCAGAAAG CATGCCTGTG CAATTGAACA AAGGGCTAAG TTCTAAAAAC ATCAGTTCAT
1681CTCCAAGCGT TGAGAGTTTG CCTGGAGGAA GAGAATTCAC TGGCTCTCCA CCTTCATCTG
1741CTACTAAAAA AGATTCCTTT TTTAGCAACA TCTCACGTTC TCGCTCACAC AGCAAAACTA
1801TGGGCAGAAA AGAATCTGAA GAAGAATTAG AAGCCCAAAT TTCCTTCCTT CAAGGGCAGT
1861TGAATGACCT GGATGCCATG TGCAAATACT GTGCAAAGGT GATGGACACT CATCTTGTAA
1921ATATTCAAGA TGTGATATTA CAAGAAAATT TGGAAAAAGA AGATCAAATT CTGGTTTCCC
1981TGGCAGGATT AAAACAGATC AAAGACATTC TAAAAGGTTC CCTGCGTTTT AACCAGAGCC
2041AGCTAGAGGC CGAAGAGAAC GAACAGATCA CCATTGCGGA CAACCACTAC TGCTCCAGCG
2101GCCAGGGCCA GGGCCGAGGC CAAGGCCAGA GCGTTCAAAT GTCAGGGGCC ATTAAACAGG
2161CCTCTTCAGA AACGCCAGGG TGCACTGATA GAGGGAATTC CGATGACTTC ATCCTGATTT
2221CCAAAGATGA TGATGGGAGC AGTGCCAGGG GCTCCTTCTC CGGCCAGGCC CAGCCTCTTC
2281GCACCCTCAG AAGCACCTCT GGGAAAAGCC AGGCCCCAGT CTGCTCCCCA CTGGTGTTCT
2341CAGATCCACT GATGGGCCCA GCCTCAGCTT CCTCCAGCAA CCCCAGCTCC AGTCCTGATG
2401ACGACAGCAG CAAGGACTCT GGCTTCACCA TTGTGAGTCC CCTGGACATC TGCCCAACTT
2461TTTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)