Construct: ORF ccsbBroadEn_02263
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016990.1_s300c1, BRDN0000396823
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZC3H11A (9877)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001319238.1 | 100% | 100% | |
| 2 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001319239.1 | 100% | 100% | |
| 3 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350261.1 | 100% | 100% | |
| 4 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350262.1 | 100% | 100% | |
| 5 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350263.1 | 100% | 100% | |
| 6 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350264.1 | 100% | 100% | |
| 7 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_014827.5 | 100% | 100% | |
| 8 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_011510199.2 | 99.9% | 100% | 57T>C |
| 9 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_011510200.2 | 99.9% | 100% | 57T>C |
| 10 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_011510201.1 | 99.9% | 100% | 57T>C |
| 11 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_017002957.2 | 99.9% | 100% | 57T>C |
| 12 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_017002958.1 | 99.9% | 100% | 57T>C |
| 13 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_017002959.2 | 99.9% | 100% | 57T>C |
| 14 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350265.1 | 99.7% | 99.7% | 1932_1933insGGTAAA |
| 15 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | NM_001350266.1 | 99.7% | 99.7% | 1932_1933insGGTAAA |
| 16 | human | 9877 | ZC3H11A | zinc finger CCCH-type conta... | XM_017002961.2 | 99.7% | 99.7% | 57T>C;1932_1933insGGTAAA |
| 17 | human | 643136 | ZC3H11B | zinc finger CCCH-type conta... | NM_001355457.2 | 96.3% | 92.6% | (many diffs) |
| 18 | human | 441155 | LOC441155 | zinc finger CCCH-type domai... | NM_001271675.1 | 96.3% | 92.7% | (many diffs) |
| 19 | human | 441155 | LOC441155 | zinc finger CCCH-type domai... | XM_017010889.2 | 96.3% | 92.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2496
- ORF length:
- 2430
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC TAATCAAGGA GAAGACTGCT ATTTTTTTTT CTATTCCACA TGTACCAAAG 121 GCGACAGCTG CCCATTCCGT CACTGTGAAG CTGCAATAGG AAATGAAACT GTTTGCACAT 181 TATGGCAAGA AGGGCGCTGT TTTCGACAGG TGTGCAGGTT TCGGCACATG GAGATTGATA 241 AAAAACGCAG TGAAATTCCT TGTTATTGGG AAAATCAGCC AACAGGATGT CAAAAATTAA 301 ACTGCGCTTT CCATCACAAT AGAGGACGAT ATGTTGATGG CCTTTTCCTA CCTCCGAGCA 361 AAACTGTGTT GCCCACTGTG CCTGAGTCAC CAGAAGAGGA AGTGAAGGCT AGCCAACTTT 421 CAGTTCAGCA GAACAAATTG TCTGTCCAGT CCAATCCTTC CCCTCAGCTG CGGAGCGTTA 481 TGAAAGTAGA AAGTTCCGAA AATGTTCCTA GCCCCACGCA TCCACCAGTT GTAATTAATG 541 CTGCAGATGA TGATGAAGAT GATGATGATC AGTTTTCTGA GGAAGGTGAT GAAACCAAAA 601 CACCTACCCT GCAACCAACT CCTGAAGTTC ACAATGGATT ACGAGTGACT TCTGTCCGGA 661 AACCTGCAGT CAATATAAAG CAAGGTGAAT GTTTGAATTT TGGAATAAAA ACTCTTGAGG 721 AAATTAAGTC AAAGAAAATG AAGGAAAAAT CTAAGAAGCA AGGTGAGGGT TCTTCAGGAG 781 TTTCCAGTCT TTTACTCCAC CCTGAGCCCG TTCCAGGTCC TGAAAAAGAA AATGTCAGGA 841 CTGTGGTGAG GACAGTAACT CTCTCCACCA AACAAGGAGA AGAACCCTTG GTTAGATTGA 901 GTCTTACTGA GAGACTGGGG AAACGAAAAT TTTCAGCAGG CGGTGACAGT GATCCTCCAT 961 TAAAGCGTAG CCTGGCACAG AGGCTAGGGA AGAAAGTTGA AGCTCCAGAA ACTAACATTG 1021 ACAAAACACC AAAGAAAGCT CAAGTTTCCA AGTCTCTTAA GGAGCGATTA GGCATGTCAG 1081 CTGATCCAGA TAATGAGGAT GCAACAGATA AAGTTAATAA AGTTGGTGAG ATCCATGTGA 1141 AGACATTAGA AGAAATTCTT CTTGAAAGAG CCAGTCAGAA ACGTGGAGAA TTGCAAACTA 1201 AACTCAAGAC AGAAGGACCT TCAAAAACTG ATGATTCTAC TTCAGGAGCA AGAAGCTCCT 1261 CCACTATCCG TATCAAAACC TTCTCTGAGG TCCTGGCTGA AAAAAAACAT CGGCAGCAGG 1321 AAGCAGAGAG ACAAAAAAGC AAAAAGGATA CAACTTGCAT CAAGCTAAAG ATTGATAGTG 1381 AAATTAAAAA AACAGTAGTT TTGCCACCCA TTGTTGCCAG CAGAGGACAA TCAGAGGAGC 1441 CTGCAGGTAA AACAAAGTCT ATGCAGGAGG TGCACATCAA GACGCTGGAA GAAATTAAAC 1501 TGGAGAAGGC ACTGAGGGTG CAGCAGAGCT CTGAGAGCAG CACCAGCTCC CCGTCTCAAC 1561 ACGAGGCCAC TCCAGGGGCA AGGCGGCTGC TGCGAATCAC CAAAAGAACA GGGATGAAAG 1621 AAGAGAAGAA CCTTCAGGAA GGAAATGAAG TTGATTCTCA GAGCAGTATT AGAACAGAAG 1681 CTAAAGAGGC TTCAGGTGAG ACCACAGGAG TTGACATCAC TAAAATTCAA GTCAAGAGAT 1741 GTGAGACCAT GAGAGAGAAG CACATGCAGA AACAGCAGGA GAGGGAAAAA TCAGTCTTGA 1801 CACCTCTTCG GGGAGATGTA GCCTCTTGCA ATACCCAAGT GGCAGAGAAA CCAGTGCTCA 1861 CTGCTGTGCC AGGAATCACA CGGCACCTGA CCAAGCGGCT TCCCACAAAG TCATCCCAGA 1921 AGGTGGAGGT AGAAACCTCA GGGATTGGAG ACTCATTATT GAATGTGAAA TGTGCAGCAC 1981 AGACCTTGGA AAAAAGGGGT AAAGCTAAAC CCAAAGTGAA CGTGAAGCCA TCTGTGGTTA 2041 AAGTTGTGTC ATCCCCCAAA TTGGCCCCAA AACGTAAGGC AGTGGAGATG CACGCTGCTG 2101 TCATTGCCGC TGTGAAGCCA CTCAGCTCCA GCAGTGTCCT ACAGGAACCC CCAGCCAAAA 2161 AGGCAGCTGT GGCTGTTGTC CCGCTTGTCT CTGAGGACAA ATCAGTCACT GTGCCTGAAG 2221 CAGAAAATCC TAGAGACAGT CTTGTGCTGC CTCCAACCCA GTCCTCTTCA GATTCCTCAC 2281 CCCCGGAGGT GTCTGGCCCT TCCTCATCCC AAATGAGCAT GAAAACTCGC CGACTCAGCT 2341 CTGCCTCAAC AGGAAAGCCC CCACTCTCTG TGGAGGATGA TTTTGAGAAA CTAATATGGG 2401 AGATTTCAGG AGGCAAATTG GAAGCTGAGA TTGACCTGGA TCCTGGGAAA GATGAAGATG 2461 ACCTTCTGCT TGAGCTATCA GAAATGATTG ATAGCTGCCC AACTTTCTTG TACAAAGTtg 2521 gcattataag aaagcattgc ttatcaattt gttgcaacga ac