Construct: ORF ccsbBroadEn_02278
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017509.1_s300c1, BRDN0000394466
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- THRAP3 (9967)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9967 | THRAP3 | thyroid hormone receptor as... | NM_001321471.2 | 100% | 100% | |
| 2 | human | 9967 | THRAP3 | thyroid hormone receptor as... | NM_005119.4 | 100% | 100% | |
| 3 | human | 9967 | THRAP3 | thyroid hormone receptor as... | NM_001321473.2 | 99.8% | 99.8% | 2502_2503insCAG |
| 4 | human | 9967 | THRAP3 | thyroid hormone receptor as... | XR_002958230.1 | 62.1% | 1_211del;2327_2518del;3269_4611del | |
| 5 | human | 9967 | THRAP3 | thyroid hormone receptor as... | XR_002958231.1 | 62% | (many diffs) | |
| 6 | human | 9967 | THRAP3 | thyroid hormone receptor as... | XM_024451301.1 | 59.4% | 59.4% | 0_1ins1161 |
| 7 | human | 9967 | THRAP3 | thyroid hormone receptor as... | XM_024451302.1 | 59.4% | 59.4% | 0_1ins1161 |
| 8 | mouse | 230753 | Thrap3 | thyroid hormone receptor as... | NM_146153.3 | 88.7% | 92.7% | (many diffs) |
| 9 | mouse | 230753 | Thrap3 | thyroid hormone receptor as... | XM_006503041.3 | 88.7% | 92.7% | (many diffs) |
| 10 | mouse | 230753 | Thrap3 | thyroid hormone receptor as... | XM_011240503.2 | 88.7% | 92.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2934
- ORF length:
- 2865
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCAAAAACA AACAAATCCA AGTCTGGATC TCGCTCTTCT CGCTCAAGAT 121 CTGCATCAAG ATCTCGTTCT CGTTCATTTT CGAAGTCTCG GTCCCGAAGC CGATCTCTCT 181 CTCGTTCAAG GAAGCGCAGG CTGAGTTCTA GGTCTCGTTC CAGATCATAT TCTCCAGCTC 241 ATAACAGAGA AAGAAACCAC CCAAGAGTAT ATCAGAATCG GGATTTCCGA GGTCACAACA 301 GAGGCTATAG AAGGCCCTAT TATTTCCGTG GGCGTAACAG AGGCTTTTAT CCATGGGGCC 361 AATATAACCG AGGAGGCTAT GGAAACTACC GCTCAAATTG GCAGAATTAC CGGCAAGCAT 421 ACAGTCCTCG TCGAGGCCGT TCAAGATCCC GGTCCCCAAA GAGAAGGTCC CCTTCACCAA 481 GGTCCAGGAG CCATTCTAGA AACTCTGATA AGTCGTCTTC TGACCGGTCA AGGCGCTCCT 541 CATCCTCCCG TTCTTCCTCC AACCATAGCC GAGTTGAATC TTCTAAGCGC AAGTCTGCAA 601 AGGAGAAAAA GTCCTCTTCT AAGGATAGCC GGCCATCTCA GGCTGCCGGG GATAACCAGG 661 GAGATGAGGC CAAGGAGCAG ACATTCTCTG GAGGCACCTC TCAAGATACA AAAGCATCTG 721 AGAGCTCGAA GCCATGGCCA GATGCCACCT ACGGCACTGG TTCTGCATCA CGGGCCTCAG 781 CAGTTTCTGA GCTGAGTCCT CGGGAGCGAA GCCCAGCTCT CAAAAGCCCC CTCCAGTCTG 841 TGGTGGTGAG GCGGCGGTCA CCCCGTCCTA GCCCCGTGCC AAAACCTAGT CCTCCACTTT 901 CCAGCACATC CCAGATGGGC TCAACTCTGC CGAGTGGTGC CGGGTATCAG TCTGGGACAC 961 ACCAAGGTCA GTTCGACCAT GGTTCTGGGT CCCTGAGTCC ATCCAAAAAG AGCCCTGTGG 1021 GTAAGAGTCC ACCATCCACT GGCTCCACAT ATGGCTCATC TCAGAAGGAG GAGAGTGCTG 1081 CTTCAGGAGG AGCAGCCTAT ACAAAGAGGT ATCTAGAAGA GCAGAAGACA GAGAATGGAA 1141 AAGATAAGGA ACAGAAACAA ACAAATACCG ATAAAGAAAA AATAAAAGAG AAAGGGAGCT 1201 TCTCTGACAC AGGCTTGGGT GATGGAAAAA TGAAATCTGA TTCTTTTGCT CCCAAAACTG 1261 ATTCTGAGAA GCCTTTTCGG GGCAGTCAGT CTCCCAAAAG GTATAAGCTC CGAGATGACT 1321 TTGAGAAGAA GATGGCTGAC TTCCACAAGG AGGAGATGGA TGATCAAGAT AAGGACAAAG 1381 CTAAGGGAAG AAAGGAATCT GAGTTTGATG ATGAACCCAA ATTTATGTCT AAAGTCATAG 1441 GTGCAAACAA AAACCAGGAG GAGGAGAAGT CAGGCAAATG GGAGGGCCTG GTATATGCAC 1501 CTCCAGGGAA GGAAAAGCAG AGAAAAACAG AGGAGCTGGA GGAGGAGTCT TTCCCAGAGA 1561 GATCCAAAAA GGAAGATCGG GGCAAGAGAA GCGAAGGTGG GCACAGGGGC TTTGTGCCTG 1621 AGAAGAATTT CCGAGTGACT GCTTATAAAG CAGTCCAGGA GAAAAGCTCA TCACCTCCCC 1681 CAAGAAAGAC CTCTGAGAGC CGAGACAAGC TGGGAGCGAA AGGAGATTTT CCCACAGGAA 1741 AGTCTTCCTT TTCCATTACT CGAGAGGCAC AGGTCAATGT CCGGATGGAC TCTTTTGATG 1801 AGGACCTCGC ACGACCCAGT GGCTTATTGG CTCAGGAACG CAAGCTTTGC CGAGATCTAG 1861 TCCATAGCAA CAAAAAGGAA CAGGAGTTTC GTTCCATTTT CCAGCACATA CAATCAGCTC 1921 AGTCTCAGCG TAGCCCCTCA GAACTGTTTG CCCAACATAT AGTGACCATT GTTCACCATG 1981 TTAAAGAGCA TCACTTTGGG TCCTCAGGAA TGACATTACA TGAACGCTTT ACTAAATACC 2041 TAAAGAGAGG AACTGAGCAG GAGGCAGCCA AAAACAAGAA AAGCCCAGAG ATACACAGGA 2101 GAATAGACAT TTCCCCCAGT ACATTCAGAA AACATGGTTT GGCTCATGAT GAAATGAAAA 2161 GTCCCCGGGA ACCTGGCTAC AAGGCTGAGG GAAAATACAA AGATGATCCT GTTGATCTCC 2221 GCCTTGATAT TGAACGTCGT AAAAAACATA AGGAGAGAGA TCTTAAACGA GGTAAATCGA 2281 GAGAATCAGT GGATTCCCGA GACTCCAGTC ACTCAAGGGA AAGGTCAGCT GAAAAAACAG 2341 AGAAAACTCA TAAAGGATCA AAGAAACAGA AGAAGCATCG GAGAGCAAGA GACAGGTCCA 2401 GATCCTCCTC CTCTTCCTCC CAGTCATCTC ACTCCTACAA AGCAGAAGAG TACACTGAAG 2461 AGACAGAGGA AAGAGAGGAG AGCACCACGG GCTTTGACAA ATCAAGACTG GGGACCAAAG 2521 ACTTTGTGGG TCCAAGTGAA AGAGGAGGTG GCAGAGCTCG AGGAACCTTT CAGTTTCGAG 2581 CCAGAGGAAG AGGCTGGGGC AGAGGCAACT ACTCTGGGAA CAATAACAAC AACAGCAACA 2641 ACGATTTTCA AAAAAGAAAC CGGGAAGAGG AGTGGGACCC AGAGTACACA CCCAAAAGCA 2701 AGAAGTATTA CTTGCATGAT GACCGTGAAG GCGAAGGCAG TGACAAGTGG GTGAGCCGGG 2761 GCCGGGGCCG AGGAGCCTTT CCTCGGGGTC GGGGCCGGTT CATGTTCCGG AAATCAAGTA 2821 CCAGCCCCAA GTGGGCCCAT GACAAGTTCA GTGGGGAGGA AGGGGAGATT GAAGACGACG 2881 AGAGTGGGAC AGAGAACCGA GAAGAGAAGG ACAATATACA GCCCACAACC GAGTTGCCAA 2941 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac