Construct: ORF ccsbBroadEn_02396
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007791.1_s300c1, BRDN0000395470
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TCIRG1 (10312)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | NM_006019.4 | 99.9% | 100% | 1245G>C |
| 2 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XM_024448320.1 | 96.3% | 67% | 713_728del;1261G>C;1478_1554del |
| 3 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XM_024448321.1 | 96.3% | 67% | 713_728del;1261G>C;1478_1554del |
| 4 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XM_024448322.1 | 96.3% | 67% | 713_728del;1261G>C;1478_1554del |
| 5 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XM_024448323.1 | 93.4% | 64.4% | (many diffs) |
| 6 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XR_001747722.1 | 91.9% | (many diffs) | |
| 7 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | NM_006053.3 | 73.9% | 73.9% | 0_1ins648 |
| 8 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XM_024448324.1 | 73.5% | 46.1% | (many diffs) |
| 9 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | NM_001351059.2 | 64% | 64% | 0_1ins894;351G>C |
| 10 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XR_001747723.2 | 44.4% | (many diffs) | |
| 11 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XR_001747721.2 | 43.8% | (many diffs) | |
| 12 | human | 10312 | TCIRG1 | T cell immune regulator 1, ... | XR_002957115.1 | 43% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2556
- ORF length:
- 2490
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG CTCCATGTTC CGGAGCGAGG AGGTGGCCCT GGTCCAGCTC TTTCTGCCCA 121 CAGCGGCTGC CTACACCTGC GTGAGTCGGC TGGGCGAGCT GGGCCTCGTG GAGTTCAGAG 181 ACCTCAACGC CTCGGTGAGC GCCTTCCAGA GACGCTTTGT GGTTGATGTT CGGCGCTGTG 241 AGGAGCTGGA GAAGACCTTC ACCTTCCTGC AGGAGGAGGT GCGGCGGGCT GGGCTGGTCC 301 TGCCCCCGCC AAAGGGGAGG CTGCCGGCAC CCCCACCCCG GGACCTGCTG CGCATCCAGG 361 AGGAGACGGA GCGCCTGGCC CAGGAGCTGC GGGATGTGCG GGGCAACCAG CAGGCCCTGC 421 GGGCCCAGCT GCACCAGCTG CAGCTCCACG CCGCCGTGCT ACGCCAGGGC CATGAACCTC 481 AGCTGGCAGC CGCCCACACA GATGGGGCCT CAGAGAGGAC GCCCCTGCTC CAGGCCCCCG 541 GGGGGCCGCA CCAGGACCTG AGGGTCAACT TTGTGGCAGG TGCCGTGGAG CCCCACAAGG 601 CCCCTGCCCT AGAGCGCCTG CTCTGGAGGG CCTGCCGCGG CTTCCTCATT GCCAGCTTCA 661 GGGAGCTGGA GCAGCCGCTG GAGCACCCCG TGACGGGCGA GCCAGCCACG TGGATGACCT 721 TCCTCATCTC CTACTGGGGT GAGCAGATCG GACAGAAGAT CCGCAAGATC ACGGACTGCT 781 TCCACTGCCA CGTCTTCCCG TTTCTGCAGC AGGAGGAGGC CCGCCTCGGG GCCCTGCAGC 841 AGCTGCAACA GCAGAGCCAG GAGCTGCAGG AGGTCCTCGG GGAGACAGAG CGGTTCCTGA 901 GCCAGGTGCT AGGCCGGGTG CTGCAGCTGC TGCCGCCAGG GCAGGTGCAG GTCCACAAGA 961 TGAAGGCCGT GTACCTGGCC CTGAACCAGT GCAGCGTGAG CACCACGCAC AAGTGCCTCA 1021 TTGCCGAGGC CTGGTGCTCT GTGCGAGACC TGCCCGCCCT GCAGGAGGCC CTGCGGGACA 1081 GCTCGATGGA GGAGGGAGTG AGTGCCGTGG CTCACCGCAT CCCCTGCCGG GACATGCCCC 1141 CCACACTCAT CCGCACCAAC CGCTTCACGG CCAGCTTCCA GGGCATCGTG GATGCCTACG 1201 GCGTGGGCCG CTACCAGGAG GTCAACCCCG CTCCCTACAC CATCATCACC TTCCCCTTCC 1261 TGTTTGCTGT GATGTTCGGG GATGTGGGCC ACGGGCTGCT CATGTTCCTC TTCGCCCTGG 1321 CCATGGTCCT TGCGGAGAAC CGACCGGCTG TGAAGGCCGC GCAGAACGAG ATCTGGCAGA 1381 CTTTCTTCAG GGGCCGCTAC CTGCTCCTGC TTATGGGCCT GTTCTCCATC TACACCGGCT 1441 TCATCTACAA CGAGTGCTTC AGTCGCGCCA CCAGCATCTT CCCCTCGGGC TGGAGTGTGG 1501 CCGCCATGGC CAACCAGTCT GGCTGGAGTG ATGCATTCCT GGCCCAGCAC ACGATGCTTA 1561 CCCTGGATCC CAACGTCACC GGTGTCTTCC TGGGACCCTA CCCCTTTGGC ATCGATCCTA 1621 TTTGGAGCCT GGCTGCCAAC CACTTGAGCT TCCTCAACTC CTTCAAGATG AAGATGTCCG 1681 TCATCCTGGG CGTCGTGCAC ATGGCCTTTG GGGTGGTCCT CGGAGTCTTC AACCACGTGC 1741 ACTTTGGCCA GAGGCACCGG CTGCTGCTGG AGACGCTGCC GGAGCTCACC TTCCTGCTGG 1801 GACTCTTCGG TTACCTCGTG TTCCTAGTCA TCTACAAGTG GCTGTGTGTC TGGGCTGCCA 1861 GGGCCGCCTC GGCCCCCAGC ATCCTCATCC ACTTCATCAA CATGTTCCTC TTCTCCCACA 1921 GCCCCAGCAA CAGGCTGCTC TACCCCCGGC AGGAGGTGGT CCAGGCCACG CTGGTGGTCC 1981 TGGCCTTGGC CATGGTGCCC ATCCTGCTGC TTGGCACACC CCTGCACCTG CTGCACCGCC 2041 ACCGCCGCCG CCTGCGGAGG AGGCCCGCTG ACCGACAGGA GGAAAACAAG GCCGGGTTGC 2101 TGGACCTGCC TGACGCATCT GTGAATGGCT GGAGCTCCGA TGAGGAAAAG GCAGGGGGCC 2161 TGGATGATGA AGAGGAGGCC GAGCTCGTCC CCTCCGAGGT GCTCATGCAC CAGGCCATCC 2221 ACACCATCGA GTTCTGCCTG GGCTGCGTCT CCAACACCGC CTCCTACCTG CGCCTGTGGG 2281 CCCTGAGCCT GGCCCACGCC CAGCTGTCCG AGGTTCTGTG GGCCATGGTG ATGCGCATAG 2341 GCCTGGGCCT GGGCCGGGAG GTGGGCGTGG CGGCTGTGGT GCTGGTCCCC ATCTTTGCCG 2401 CCTTTGCCGT GATGACCGTG GCTATCCTGC TGGTGATGGA GGGACTCTCA GCCTTCCTGC 2461 ACGCCCTGCG GCTGCACTGG GTGGAATTCC AGAACAAGTT CTACTCAGGC ACGGGCTACA 2521 AGCTGAGTCC CTTCACCTTC GCTGCCACAG ATGACTACCC AACTTTCTTG TACAAAGTtg 2581 gcattataag aaagcattgc ttatcaattt gttgcaacga ac