Construct: ORF ccsbBroadEn_02404

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015602.1_s300c1, BRDN0000398227
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MRVI1 (10335)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10335 MRVI1 murine retrovirus integrati... NM_001100167.2 100% 100%
2 human 10335 MRVI1 murine retrovirus integrati... NM_001206881.1 100% 100%
3 human 10335 MRVI1 murine retrovirus integrati... NM_001206880.1 77.2% 64.4% (many diffs)
4 human 10335 MRVI1 murine retrovirus integrati... NM_001100163.2 72.7% 72.7% 1_672del
5 human 10335 MRVI1 murine retrovirus integrati... NM_001098579.2 66% 66% 1_921del
6 human 10335 MRVI1 murine retrovirus integrati... NM_130385.3 65.4% 65.4% 1_945del
7 mouse 17540 Mrvi1 MRV integration site 1 XM_006507418.3 82.5% 83.7% (many diffs)
8 mouse 17540 Mrvi1 MRV integration site 1 NM_194464.3 58.8% 59.5% (many diffs)
9 mouse 17540 Mrvi1 MRV integration site 1 XM_006507415.2 58.8% 59.5% (many diffs)
10 mouse 17540 Mrvi1 MRV integration site 1 XM_006507416.3 58.8% 59.5% (many diffs)
11 mouse 17540 Mrvi1 MRV integration site 1 XM_011241686.1 57.6% 58.4% (many diffs)
12 mouse 17540 Mrvi1 MRV integration site 1 NM_010826.5 54.7% 55.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1860
ORF length:
1791
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCCTGAAC AGCCCTCAGC CTGGCCCCGT GGAGAGCGAG CTGGGGAAGC
121AGCTCTTGAA AACGGGCTGG GAGGGCAGCC CTCTGCCGAG AAGTCCAACC CAGGATGCGG
181CAGGAGTGGG TCCCCCAGCC TCCCAGGGGA GAGGCCCAGC TGGAGAGCCG ATGGGGCCCG
241AGGCTGGCTC CAAAGCTGAG CTTCCACCCA CTGTGTCCCG GCCCCCGCTG CTGCGAGGGC
301TCTCCTGGGA CAGTGGCCCT GAAGAACCTG GCCCCCGGCT GCAGAAAGTG CTTGCCAAGC
361TGCCACTGGC AGAGGAAGAA AAGCGTTTTG CAGGCAAGGC CGGCGGCAAG CTGGCCAAGG
421CCCCTGGTCT CAAAGACTTT CAGATACAAG TGCAGCCCGT GCGGATGCAG AAACTGACCA
481AGCTCCGAGA GGAGCACATC CTGATGAGAA ATCAGAACTT AGTGGGGCTC AAGCTTCCAG
541ACCTTAGTGA AGCAGCTGAG CAGGAAAAAG GGCTTCCTTC TGAACTCTCC CCAGCTATTG
601AGGAAGAAGA GTCAAAGAGT GGCTTAGATG TCATGCCTAA TATTTCTGAT GTGCTGCTGC
661GCAAACTGCG GGTCCACAGG AGTCTCCCTG GAAGTGCCCC TCCACTCACT GAAAAGGAAG
721TTGAGAACGT GTTTGTGCAA CTGTCCTTGG CCTTTAGAAA TGACAGCTAC ACTCTGGAAT
781CTAGAATTAA CCAGGCTGAA AGGGAACGCA ACCTGACAGA GGAGAACACT GAGAAAGAAC
841TGGAAAACTT CAAAGCTTCC ATTACGTCCT CAGCTTCACT CTGGCACCAC TGTGAGCACC
901GGGAAACCTA CCAGAAGTTG CTGGAGGACA TCGCTGTCCT GCACCGCCTG GCTGCCCGCC
961TCTCCAGCCG AGCTGAGGTG GTAGGCGCCG TCCGCCAGGA AAAGCGCATG TCGAAAGCAA
1021CGGAAGTGAT GATGCAGTAT GTGGAGAATC TAAAGAGGAC GTATGAGAAG GACCATGCGG
1081AGCTCATGGA GTTTAAAAAG CTTGCAAATC AGAATTCAAG CCGCAGCTGT GGCCCCTCTG
1141AAGATGGGGT CCCTCGCACG GCACGGTCCA TGTCCCTCAC GCTGGGAAAG AATATGCCTC
1201GCCGGAGGGT CAGCGTTGCT GTGGTTCCTA AGTTTAATGC CCTGAATCTG CCTGGCCAAA
1261CTCCCAGCTC ATCATCCATT CCCTCCTTAC CAGCCTTGTC GGAATCACCC AATGGGAAAG
1321GCAGCCTACC TGTCACTTCA GCACTGCCTG CACTTTTGGA AAATGGAAAG ACAAATGGGG
1381ACCCAGATTG TGAAGCCTCT GCTCCTGCGC TGACCCTGAG CTGCCTGGAG GAGCTTAGTC
1441AGGAGACCAA GGCCAGGATG GAGGAAGAAG CCTACAGCAA GGGATTCCAA GAAGGTCTAA
1501AGAAGACCAA AGAACTTCAA GACCTGAAGG AGGAGGAGGA AGAACAGAAG AGTGAGAGTC
1561CTGAGGAACC TGAAGAGGTA GAAGAAACTG AGGAAGAGGA AAAGGGCCCA AGAAGCAGCA
1621AACTTGAAGA ATTGGTCCAT TTCTTACAAG TCATGTATCC CAAACTGTGT CAGCACTGGC
1681AAGTGATCTG GATGATGGCT GCAGTGATGC TGGTCTTGAC TGTTGTGCTG GGGCTCTACA
1741ATTCCTATAA CTCTTGTGCA GAGCAGGCTG ATGGGCCCCT TGGAAGATCC ACTTGCTCGG
1801CAGCCCAGAG GGACTCCTGG TGGAGCTCAG GACTCCAGCA TGAGCAGCCT ACAGAGCAGT
1861TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1921acgaac

Download FASTA (ORF) (Full)

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