Construct: ORF ccsbBroadEn_02418
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014682.1_s300c1, BRDN0000393139
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANAPC10 (10393)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256706.2 | 100% | 100% | |
| 2 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256707.1 | 100% | 100% | |
| 3 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256708.1 | 100% | 100% | |
| 4 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_014885.4 | 100% | 100% | |
| 5 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531524.3 | 100% | 100% | |
| 6 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_024453875.1 | 100% | 100% | |
| 7 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256709.1 | 94.3% | 94.3% | 1_33del |
| 8 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_017007640.2 | 94.3% | 94.3% | 1_33del |
| 9 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001318367.1 | 84.4% | 84.4% | 1_102del |
| 10 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_017007639.2 | 84.4% | 84.4% | 1_102del |
| 11 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_024453874.1 | 82.9% | 82.9% | 1_114del |
| 12 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_017007642.1 | 64.5% | 57.3% | (many diffs) |
| 13 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256710.1 | 60.1% | 60.5% | (many diffs) |
| 14 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256711.1 | 60.1% | 60.5% | (many diffs) |
| 15 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_017007644.2 | 60.1% | 60.5% | (many diffs) |
| 16 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531532.2 | 59% | 58.9% | 328A>C;330_330delGins226 |
| 17 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_017007641.1 | 57.9% | 51.3% | (many diffs) |
| 18 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531525.2 | 56.9% | 50.4% | (many diffs) |
| 19 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531527.2 | 52.1% | 48.4% | (many diffs) |
| 20 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_024453876.1 | 49.9% | 50.2% | (many diffs) |
| 21 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531529.2 | 49% | 48.8% | 1_114del;442A>C;444_444delGins226 |
| 22 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NM_001256712.1 | 44.8% | 36.3% | 205_206ins121;249_250ins185 |
| 23 | human | 10393 | ANAPC10 | anaphase promoting complex ... | XM_011531531.3 | 37.2% | 30.2% | 1_114del;319_320ins121;363_364ins185 |
| 24 | human | 10393 | ANAPC10 | anaphase promoting complex ... | NR_046345.1 | 27.5% | (many diffs) | |
| 25 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | NM_026904.2 | 92.6% | 99.4% | (many diffs) |
| 26 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | XM_006531339.3 | 92.6% | 99.4% | (many diffs) |
| 27 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | XM_006531340.3 | 92.6% | 99.4% | (many diffs) |
| 28 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | XM_006531343.3 | 92.6% | 99.4% | (many diffs) |
| 29 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | XM_006531341.3 | 54.7% | 58.3% | (many diffs) |
| 30 | mouse | 68999 | Anapc10 | anaphase promoting complex ... | XM_006531342.1 | 54.7% | 58.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 621
- ORF length:
- 555
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TACACCAAAC AAGACACCTC CTGGTGCTGA CCCCAAGCAG TTGGAAAGGA 121 CTGGAACAGT ACGGGAAATT GGGTCACAAG CTGTTTGGTC ACTCTCATCT TGCAAACCAG 181 GATTTGGAGT GGATCAGTTA CGAGATGACA ATCTAGAAAC TTATTGGCAA TCAGATGGTT 241 CCCAGCCTCA TTTAGTGAAC ATCCAATTCA GAAGAAAAAC AACAGTGAAG ACATTATGTA 301 TTTATGCAGA CTACAAATCT GATGAAAGCT ATACTCCAAG CAAGATCTCA GTCAGAGTAG 361 GAAATAATTT TCACAACCTT CAAGAAATTC GGCAACTTGA GTTGGTGGAA CCAAGTGGCT 421 GGATTCATGT TCCCTTAACT GACAATCATA AGAAGCCAAC TCGTACATTC ATGATACAGA 481 TTGCTGTTCT AGCCAATCAC CAGAATGGAA GAGACACCCA TATGAGACAA ATTAAAATAT 541 ACACACCAGT AGAAGAGAGC TCCATTGGTA AATTTCCTAG ATGTACAACT ATAGATTTCA 601 TGATGTATCG TTCAATAAGG TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc 661 attgcttatc aatttgttgc aacgaac