Construct: ORF ccsbBroadEn_02423
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011862.1_s300c1, BRDN0000392650
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD2BP2 (10421)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10421 | CD2BP2 | CD2 cytoplasmic tail bindin... | NM_001243646.1 | 100% | 100% | |
| 2 | human | 10421 | CD2BP2 | CD2 cytoplasmic tail bindin... | NM_006110.3 | 100% | 100% | |
| 3 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | NM_001285905.1 | 86.8% | 90.3% | (many diffs) |
| 4 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | NM_001285906.1 | 86.8% | 90.3% | (many diffs) |
| 5 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | NM_001285907.1 | 86.8% | 90.3% | (many diffs) |
| 6 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | NM_027353.4 | 86.8% | 90.3% | (many diffs) |
| 7 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | XM_006508197.2 | 86.8% | 90.3% | (many diffs) |
| 8 | mouse | 70233 | Cd2bp2 | CD2 antigen (cytoplasmic ta... | XM_006508198.3 | 86.8% | 90.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1089
- ORF length:
- 1023
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTC TACAAAAAAG 61 TTGGCATGCC AAAGAGGAAA GTGACCTTCC AAGGCGTGGG AGATGAGGAG GATGAGGATG 121 AAATCATTGT CCCCAAGAAG AAGCTGGTGG ACCCTGTGGC TGGGTCAGGG GGTCCTGGGA 181 GCCGCTTTAA AGGCAAACAC TCTTTGGATA GCGATGAGGA GGAGGATGAT GATGATGGGG 241 GGTCCAGCAA ATATGACATC TTGGCCTCAG AGGATGTAGA AGGTCAGGAG GCAGCCACAC 301 TCCCCAGCGA GGGGGGTGTT CGGATCACAC CCTTTAACCT GCAGGAGGAG ATGGAGGAAG 361 GCCACTTTGA TGCCGATGGC AACTACTTCC TGAACCGGGA TGCTCAGATC CGAGACAGCT 421 GGCTGGACAA CATTGACTGG GTGAAGATCC GGGAGCGGCC ACCTGGCCAG CGCCAGGCCT 481 CAGACTCGGA GGAGGAGGAC AGCTTGGGCC AGACCTCAAT GAGTGCCCAA GCCCTCTTGG 541 AGGGACTTTT GGAGCTCCTA TTGCCTAGAG AGACAGTGGC TGGGGCACTG AGGCGTCTGG 601 GGGCCCGAGG AGGAGGCAAA GGGAGAAAGG GGCCTGGGCA ACCCAGTTCC CCTCAGCGCC 661 TGGACCGGCT CTCCGGGTTG GCCGACCAGA TGGTGGCCCG GGGCAACCTT GGTGTGTACC 721 AGGAAACAAG GGAACGGTTG GCTATGCGTC TGAAGGGTTT GGGGTGTCAG ACCCTAGGAC 781 CCCACAATCC CACACCCCCA CCCTCCCTGG ACATGTTCGC TGAGGAGTTG GCGGAGGAGG 841 AACTGGAGAC CCCAACCCCT ACCCAGAGAG GAGAAGCAGA GTCGCGGGGA GATGGTCTGG 901 TGGATGTGAT GTGGGAATAT AAGTGGGAGA ACACGGGGGA TGCCGAGCTG TATGGGCCCT 961 TCACCAGCGC CCAGATGCAG ACCTGGGTGA GTGAAGGCTA CTTCCCGGAC GGTGTTTATT 1021 GCCGGAAGCT GGACCCCCCT GGTGGTCAGT TCTACAACTC CAAACGCATT GACTTTGACC 1081 TCTACACCTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 1141 tttgttgcaa cgaac