Construct: ORF ccsbBroadEn_02438
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011465.1_s300c1, BRDN0000386999
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM3C (10447)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10447 | FAM3C | FAM3 metabolism regulating ... | NM_001040020.1 | 100% | 100% | |
| 2 | human | 10447 | FAM3C | FAM3 metabolism regulating ... | NM_014888.3 | 100% | 100% | |
| 3 | human | 10447 | FAM3C | FAM3 metabolism regulating ... | XM_011515736.2 | 100% | 100% | |
| 4 | human | 10447 | FAM3C | FAM3 metabolism regulating ... | XM_011515737.2 | 100% | 100% | |
| 5 | mouse | 27999 | Fam3c | family with sequence simila... | NM_138587.4 | 88.2% | 94.2% | (many diffs) |
| 6 | mouse | 27999 | Fam3c | family with sequence simila... | XM_006505102.3 | 88.2% | 94.2% | (many diffs) |
| 7 | mouse | 27999 | Fam3c | family with sequence simila... | XM_006505103.3 | 88.2% | 94.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 747
- ORF length:
- 681
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GGTAGCAGGT GCTGCAAAGT TGGTGGTAGC TGTGGCAGTG TTTTTACTGA 121 CATTTTATGT TATTTCTCAA GTATTTGAAA TAAAAATGGA TGCAAGTTTA GGAAATCTAT 181 TTGCAAGATC AGCATTGGAC ACAGCTGCAC GTTCTACAAA GCCTCCCAGA TATAAGTGTG 241 GGATCTCAAA AGCTTGCCCT GAGAAGCATT TTGCTTTTAA AATGGCAAGT GGAGCAGCCA 301 ACGTGGTGGG ACCCAAAATC TGCCTGGAAG ATAATGTTTT AATGAGTGGT GTTAAGAATA 361 ATGTTGGAAG AGGGATCAAT GTTGCCTTGG CAAATGGAAA AACAGGAGAA GTATTAGACA 421 CTAAATATTT TGACATGTGG GGAGGAGATG TGGCACCATT TATTGAGTTT CTGAAGGCCA 481 TACAAGATGG AACAATAGTT TTAATGGGAA CATACGATGA TGGAGCAACC AAACTCAATG 541 ATGAGGCACG GCGGCTCATT GCTGATTTGG GGAGCACATC TATTACTAAT CTTGGTTTTA 601 GAGACAACTG GGTCTTCTGT GGTGGGAAGG GCATTAAGAC AAAAAGCCCT TTTGAACAGC 661 ACATAAAGAA CAATAAGGAT ACAAACAAAT ATGAAGGATG GCCTGAAGTT GTAGAAATGG 721 AAGGATGCAT CCCCCAGAAG CAAGACTACC CAACTTTCTT GTACAAAGTt ggcattataa 781 gaaagcattg cttatcaatt tgttgcaacg aac