Construct: ORF ccsbBroadEn_02445
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001409.1_s300c1, BRDN0000386375
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TIMM44 (10469)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10469 | TIMM44 | translocase of inner mitoch... | NM_006351.4 | 100% | 100% | |
| 2 | mouse | 21856 | Timm44 | translocase of inner mitoch... | NM_011592.2 | 84.7% | 89.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1422
- ORF length:
- 1356
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGCGGCGGCC CTGCGGAGTG GCTGGTGCCG CTGTCCACGG AGATGCCTCG 121 GCAGTGGAAT CCAATTTCTT TCCAGCCACA ACCTACCCCA TGGGTCGACC TATCAGATGC 181 GCCGGCCGGG CGGAGAGCTG CCACTGTCCA AATCATATTC TTCTGGAAAC AGAAAAGGCT 241 TTCTGTCCGG CTTGCTAGAT AATGTCAAAC AAGAATTAGC CAAAAACAAA GAAATGAAAG 301 AAAGTATAAA AAAATTCCGT GACGAGGCCA GAAGGCTAGA AGAATCAGAC GTGCTCCAGG 361 AGGCCAGAAG GAAATACAAA ACCATCGAGT CAGAAACCGT GCGGACGAGC GAGGTGCTAC 421 GGAAGAAGCT TGGGGAGCTG ACGGGCACCG TGAAGGAGAG CCTTCACGAA GTCAGTAAAA 481 GTGATCTCGG CCGGAAAATC AAGGAGGGCG TGGAGGAAGC AGCCAAGACG GCCAAGCAGT 541 CGGCCGAGTC GGTATCCAAA GGCGGGGAGA AGCTGGGCAG GACAGCGGCC TTCAGAGCCC 601 TCTCCCAGGG GGTGGAGTCC GTGAAGAAGG AAATTGACGA CAGCGTCCTG GGACAGACCG 661 GGCCCTACCG GAGGCCCCAG CGACTCCGGA AGAGAACGGA GTTTGCGGGA GATAAGTTCA 721 AGGAGGAGAA AGTGTTTGAG CCAAACGAGG AGGCCCTGGG GGTCGTGCTG CACAAGGACT 781 CCAAGTGGTA CCAGCAGTGG AAGGACTTCA AGGAGAACAA CGTGGTGTTT AACCGGTTCT 841 TCGAGATGAA GATGAAGTAT GACGAAAGCG ACAACGCGTT CATCCGGGCA TCCCGGGCCC 901 TTACGGACAA GGTCACCGAC TTGCTGGGGG GCCTGTTCTC CAAGACAGAG ATGTCGGAGG 961 TGCTCACGGA GATCCTCCGG GTGGACCCGG CCTTTGACAA GGACCGGTTT CTGAAACAGT 1021 GCGAGAACGA CATCATCCCC AATGTCCTGG AGGCCATGAT TTCTGGAGAG CTTGACATTC 1081 TCAAAGACTG GTGCTATGAA GCTACTTACA GCCAGCTGGC CCACCCCATC CAGCAGGCCA 1141 AGGCACTGGG TCTCCAGTTC CATTCTCGCA TCCTAGACAT TGACAACGTC GACCTGGCCA 1201 TGGGCAAGAT GATGGAGCAG GGGCCGGTGC TGATCATCAC CTTCCAGGCA CAGCTGGTGA 1261 TGGTGGTCAG GAACCCCAAA GGCGAGGTGG TGGAGGGTGA CCCGGACAAG GTGCTGCGGA 1321 TGCTGTACGT GTGGGCGCTC TGCCGAGACC AGGACGAGCT CAACCCCTAC GCGGCCTGGC 1381 GGCTCCTGGA CATCTCGGCC TCCAGCACCG AGCAGATTCT CTGCCCAACT TTCTTGTACA 1441 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac