Construct: ORF ccsbBroadEn_02449

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001209.1_s300c1, BRDN0000392361
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC25A17 (10478)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10478 SLC25A17 solute carrier family 25 me... NM_006358.4 100% 100%
2 human 10478 SLC25A17 solute carrier family 25 me... NM_001282726.1 87.6% 87.2% 0_1ins112;2delT;4A>G
3 human 10478 SLC25A17 solute carrier family 25 me... NM_001282727.1 76.2% 76.2% 114_115ins219
4 human 10478 SLC25A17 solute carrier family 25 me... NR_104237.1 35.3% (many diffs)
5 human 10478 SLC25A17 solute carrier family 25 me... NR_104235.1 35.3% (many diffs)
6 human 10478 SLC25A17 solute carrier family 25 me... NR_104236.1 33.5% 1_151del;333_334ins152;921_2142del
7 human 10478 SLC25A17 solute carrier family 25 me... NR_104238.1 33% (many diffs)
8 mouse 20524 Slc25a17 solute carrier family 25 (m... NM_011399.3 88.3% 95.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
987
ORF length:
921
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC TTCCGTGCTG TCCTACGAAA GCCTGGTCCA CGCCGTGGCC GGAGCCGTGG
121GAAGCGTGAC AGCAATGACA GTGTTTTTTC CCCTGGATAC AGCTAGACTT CGACTTCAGG
181TTGATGAGAA AAGAAAATCC AAAACTACAC ACATGGTGCT CCTGGAGATC ATTAAAGAAG
241AAGGACTCCT GGCACCATAT CGAGGGTGGT TTCCAGTGAT TTCCAGTCTC TGCTGCTCCA
301ATTTTGTCTA TTTCTACACT TTTAATAGCC TCAAAGCACT CTGGGTCAAA GGTCAACATT
361CTACCACTGG AAAAGATCTG GTAGTTGGGT TTGTTGCAGG AGTGGTTAAT GTGTTGCTAA
421CAACTCCACT CTGGGTGGTA AACACCAGAC TGAAGCTTCA AGGAGCAAAA TTTAGGAATG
481AAGACATTGT ACCAACAAAC TACAAAGGTA TCATTGATGC TTTTCATCAG ATCATTCGCG
541ATGAAGGAAT CTCGGCTTTA TGGAATGGCA CATTTCCCTC ATTGCTGTTG GTCTTCAATC
601CTGCCATCCA GTTCATGTTT TATGAAGGTT TAAAACGGCA GCTTTTAAAG AAACGGATGA
661AGCTTTCTTC CTTGGATGTG TTCATCATTG GTGCAGTAGC CAAAGCGATT GCCACCACGG
721TGACCTATCC CCTGCAGACG GTACAGTCAA TTCTGAGGTT TGGGCGTCAT AGACTAAACC
781CAGAAAACAG AACATTGGGA AGTCTTCGGA ATATTCTCTA TCTTCTTCAC CAACGAGTAA
841GACGTTTTGG AATAATGGGA CTCTACAAAG GCCTTGAAGC CAAACTGCTG CAGACAGTCC
901TCACTGCTGC TCTCATGTTC CTTGTTTATG AGAAACTGAC AGCTGCCACC TTCACAGTTA
961TGGGGCTGAA GCGTGCACAC CAACACTGCC CAACTTTCTT GTACAAAGTt ggcattataa
1021gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)