Construct: ORF ccsbBroadEn_02463

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007864.1_s300c1, BRDN0000396669
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TM9SF1 (10548)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10548 TM9SF1 transmembrane 9 superfamily... NM_006405.7 100% 100%
2 human 10548 TM9SF1 transmembrane 9 superfamily... NM_001289006.1 85.6% 85.6% 0_1ins261
3 human 10548 TM9SF1 transmembrane 9 superfamily... NM_001014842.3 79.8% 76.8% (many diffs)
4 mouse 74140 Tm9sf1 transmembrane 9 superfamily... NM_028780.3 92.9% 97.5% (many diffs)
5 mouse 74140 Tm9sf1 transmembrane 9 superfamily... XM_017316217.1 92.9% 97.5% (many diffs)
6 mouse 74140 Tm9sf1 transmembrane 9 superfamily... XM_006519616.1 77.1% 66.5% (many diffs)
7 mouse 74140 Tm9sf1 transmembrane 9 superfamily... XM_011245209.1 67.2% 64.7% (many diffs)
8 mouse 74140 Tm9sf1 transmembrane 9 superfamily... XM_006519617.2 63.8% 60.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1884
ORF length:
1818
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAC AGTCGTAGGG AACCCTCGAA GTTGGAGCTG CCAGTGGTTG CCAATCCTGA
121TACTGTTGCT GGGCACAGGC CATGGGCCAG GGGTGGAAGG CGTGACACAC TACAAGGCCG
181GCGACCCTGT TATTCTGTAT GTCAACAAAG TGGGACCCTA CCATAACCCT CAGGAAACTT
241ACCACTACTA TCAGCTTCCA GTCTGCTGCC CTGAGAAGAT ACGTCACAAA AGCCTTAGCC
301TGGGTGAAGT GCTGGATGGG GACCGAATGG CTGAGTCTTT GTATGAGATC CGCTTTCGGG
361AAAACGTGGA GAAGAGAATT CTGTGCCACA TGCAGCTCAG TTCTGCACAG GTGGAGCAGC
421TGCGCCAGGC CATTGAAGAA CTGTACTACT TTGAATTTGT GGTAGATGAC TTGCCAATCC
481GGGGCTTTGT GGGCTACATG GAGGAGAGTG GTTTCCTGCC ACACAGCCAC AAGATAGGAC
541TCTGGACCCA TTTGGACTTC CACCTAGAAT TCCATGGAGA CCGAATTATA TTTGCCAATG
601TTTCAGTGCG GGACGTCAAG CCCCACAGCT TGGATGGGTT ACGACCTGAC GAGTTCCTAG
661GCCTTACCCA CACTTATAGC GTGCGCTGGT CTGAGACTTC AGTGGAGCGT CGGAGTGACA
721GGCGCCGTGG TGACGATGGT GGTTTCTTTC CTCGAACACT GGAAATCCAT TGGTTGTCCA
781TCATCAACTC CATGGTGCTT GTGTTTTTAC TGGTGGGTTT TGTGGCTGTC ATTCTAATGC
841GTGTGCTTCG GAATGACCTG GCTCGGTACA ACTTAGATGA GGAGACCACC TCTGCAGGTT
901CTGGTGATGA CTTTGACCAG GGTGACAATG GCTGGAAAAT TATCCATACA GATGTCTTCC
961GCTTCCCCCC ATACCGTGGT CTGCTCTGTG CTGTGCTTGG CGTGGGTGCC CAGTTCCTGG
1021CCCTTGGCAC TGGCATTATT GTCATGGCAC TGCTGGGCAT GTTCAATGTG CACCGTCATG
1081GGGCCATTAA CTCAGCAGCC ATCTTGTTGT ATGCCCTGAC CTGCTGCATC TCTGGCTACG
1141TGTCCAGCCA CTTCTACCGG CAGATTGGAG GCGAGCGTTG GGTGTGGAAC ATCATTCTCA
1201CCACCAGTCT CTTCTCTGTG CCTTTCTTCC TGACGTGGAG TGTGGTGAAC TCAGTGCATT
1261GGGCCAATGG TTCGACACAG GCTCTGCCAG CCACAACCAT CCTGCTGCTT CTGACGGTTT
1321GGCTGCTGGT GGGCTTTCCC CTCACTGTCA TTGGAGGCAT CTTTGGGAAG AACAACGCCA
1381GCCCCTTTGA TGCACCCTGT CGCACCAAGA ACATCGCCCG GGAGATTCCA CCCCAGCCCT
1441GGTACAAGTC TACTGTCATC CACATGACTG TTGGAGGCTT CCTGCCTTTC AGTGCCATCT
1501CTGTGGAGCT GTACTACATC TTTGCCACAG TATGGGGTCG GGAGCAGTAC ACTTTGTACG
1561GCATCCTCTT CTTTGTCTTC GCCATCCTGC TGAGTGTGGG GGCTTGCATC TCCATTGCAC
1621TCACCTACTT CCAGTTGTCT GGGGAGGATT ACCGCTGGTG GTGGCGATCT GTGCTGAGTG
1681TTGGCTCCAC CGGCCTCTTC ATCTTCCTCT ACTCAGTTTT CTATTATGCC CGGCGCTCCA
1741ACATGTCTGG GGCAGTACAG ACAGTAGAGT TCTTCGGCTA CTCCTTACTC ACTGGTTATG
1801TCTTCTTCCT CATGCTGGGC ACCATCTCCT TTTTTTCTTC CCTAAAGTTC ATCCGGTATA
1861TCTATGTTAA CCTCAAGATG GACTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1921agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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