Transcript: Mouse XM_006519616.1

PREDICTED: Mus musculus transmembrane 9 superfamily member 1 (Tm9sf1), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Tm9sf1 (74140)
Length:
2348
CDS:
438..1949

Additional Resources:

NCBI RefSeq record:
XM_006519616.1
NBCI Gene record:
Tm9sf1 (74140)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006519616.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000126832 CTGATGAATTGCTGGGCCTTA pLKO.1 1018 CDS 100% 4.050 5.670 N Tm9sf1 n/a
2 TRCN0000126831 CCATTGGTTGTCCATCATCAA pLKO.1 1139 CDS 100% 4.950 3.465 N Tm9sf1 n/a
3 TRCN0000059665 CCTACCATAACCCTCAGGAAA pLKO.1 589 CDS 100% 4.950 3.465 N TM9SF1 n/a
4 TRCN0000126833 CGTGGAGCTGTACTACATCTT pLKO.1 1710 CDS 100% 4.950 3.465 N Tm9sf1 n/a
5 TRCN0000126830 CCCTCAGGAAACTTACCACTA pLKO.1 599 CDS 100% 4.050 2.835 N Tm9sf1 n/a
6 TRCN0000126829 GCCACAGAACTCTGGCTCTTT pLKO.1 2102 3UTR 100% 4.950 2.970 N Tm9sf1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006519616.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02463 pDONR223 100% 77.1% 66.5% None (many diffs) n/a
2 ccsbBroad304_02463 pLX_304 0% 77.1% 66.5% V5 (many diffs) n/a
3 TRCN0000466722 CAGCCCGCCGCGTTCTTTCCGTTT pLX_317 11.3% 77.1% 66.5% V5 (many diffs) n/a
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