Construct: ORF ccsbBroadEn_02542
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002391.1_s300c1, BRDN0000390188
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CD300C (10871)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10871 | CD300C | CD300c molecule | NM_006678.5 | 100% | 100% | |
| 2 | human | 10871 | CD300C | CD300c molecule | XM_017024033.2 | 75.3% | 65.2% | (many diffs) |
| 3 | human | 10871 | CD300C | CD300c molecule | XM_017024034.2 | 72.9% | 55.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 738
- ORF length:
- 672
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGCCAGGGCC TGGGCCTCGT GGCGGTCTTC AGCTCTGCTC CTCCTGCTTG 121 TCCCAGGCTA TTTTCCTCTG AGCCACCCCA TGACCGTGGC GGGCCCCGTG GGGGGATCCC 181 TGAGTGTGCA GTGTCGCTAT GAGAAGGAAC ACAGGACCCT CAACAAATTC TGGTGCAGAC 241 CACCACAGAT TCTCCGATGT GACAAGATTG TGGAGACCAA AGGGTCAGCA GGGAAAAGGA 301 ATGGCCGAGT GTCCATCAGG GACAGTCCTG CAAACCTCAG CTTCACAGTG ACCCTGGAGA 361 ATCTCACAGA GGAGGACGCA GGCACCTACT GGTGTGGGGT GGATACACCG TGGCTCCGAG 421 ACTTTCATGA TCCCATTGTC GAGGTTGAGG TGTCCGTGTT CCCGGCCGGG ACGACCACAG 481 CCTCCAGCCC CCAGAGCTCC ATGGGCACCT CAGGTCCTCC CACGAAGCTG CCCGTGCACA 541 CCTGGCCCAG CGTGACCAGA AAGGACAGCC CCGAACCCAG CCCACACCCT GGCTCCCTGT 601 TCAGCAATGT CCGCTTCCTG CTCCTGGTCC TCTTGGAGCT GCCCCTGCTC CTGAGCATGC 661 TGGGTGCCGT CCTCTGGGTG AACAGACCTC AGAGAAGCTC TAGAAGCAGG CAGAATTGGC 721 CCAAGGGTGA GAACCAGTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 781 gcttatcaat ttgttgcaac gaac