Construct: ORF ccsbBroadEn_02576
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004099.1_s300c1, BRDN0000384952
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MLLT11 (10962)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10962 | MLLT11 | MLLT11 transcription factor... | NM_006818.4 | 100% | 100% | |
| 2 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | NM_019914.4 | 87.9% | 85.7% | (many diffs) |
| 3 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_006501800.3 | 87.9% | 85.7% | (many diffs) |
| 4 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319669.1 | 87.9% | 85.7% | (many diffs) |
| 5 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319670.1 | 87.9% | 85.7% | (many diffs) |
| 6 | mouse | 56772 | Mllt11 | myeloid/lymphoid or mixed-l... | XM_017319671.1 | 87.9% | 85.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 336
- ORF length:
- 270
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG GGACCCTGTG AGTAGCCAGT ACAGTTCCTT TCTTTTCTGG AGGATGCCCA 121 TCCCAGAACT GGATCTGTCG GAGCTGGAAG GCCTGGGTCT GTCAGATACA GCCACCTACA 181 AGGTCAAAGA CAGCAGCGTT GGCAAAATGA TCGGGCAAGC AACTGCAGCA GACCAGGAGA 241 AAAACCCTGA AGGTGATGGC CTCCTTGAGT ACAGCACCTT CAACTTCTGG AGAGCTCCCA 301 TTGCCAGCAT CCACTCCTTC GAACTGGACT TGCTCTACCC AACTTTCTTG TACAAAGTtg 361 gcattataag aaagcattgc ttatcaattt gttgcaacga ac