Transcript: Human NM_006818.4

Homo sapiens MLLT11 transcription factor 7 cofactor (MLLT11), mRNA.

Source:
NCBI, updated 2019-09-15
Taxon:
Homo sapiens (human)
Gene:
MLLT11 (10962)
Length:
2483
CDS:
164..436

Additional Resources:

NCBI RefSeq record:
NM_006818.4
NBCI Gene record:
MLLT11 (10962)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_006818.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000005654 GCCAGAGTTGAGTTCTATGTA pLKO.1 561 3UTR 100% 5.625 3.938 N MLLT11 n/a
2 TRCN0000318747 GCCAGAGTTGAGTTCTATGTA pLKO_005 561 3UTR 100% 5.625 3.938 N MLLT11 n/a
3 TRCN0000005655 CCTTGAGTACAGCACCTTCAA pLKO.1 361 CDS 100% 4.950 3.465 N MLLT11 n/a
4 TRCN0000349642 CCTTGAGTACAGCACCTTCAA pLKO_005 361 CDS 100% 4.950 3.465 N MLLT11 n/a
5 TRCN0000190016 GAGTACAGCACCTTCAACTTC pLKO.1 365 CDS 100% 4.950 3.465 N Mllt11 n/a
6 TRCN0000005657 CTTCGAACTGGACTTGCTCTA pLKO.1 415 CDS 100% 4.050 2.835 N MLLT11 n/a
7 TRCN0000318810 CTTCGAACTGGACTTGCTCTA pLKO_005 415 CDS 100% 4.050 2.835 N MLLT11 n/a
8 TRCN0000005656 TCTGTCAGATACAGCCACCTA pLKO.1 256 CDS 100% 2.640 1.848 N MLLT11 n/a
9 TRCN0000010958 CCACCTACAAGGTCAAAGACA pLKO.1 270 CDS 100% 3.000 1.800 N MLLT11 n/a
10 TRCN0000318746 CCACCTACAAGGTCAAAGACA pLKO_005 270 CDS 100% 3.000 1.800 N MLLT11 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_006818.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02576 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02576 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000468457 TGCTGAATCACAGCTTAGTCACTA pLX_317 100% 100% 100% V5 n/a
4 TRCN0000489349 AACCCATTCCGCTCGGCCTCAACG pLX_317 100% 100% 100% V5 (not translated due to prior stop codon) n/a
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