Construct: ORF ccsbBroadEn_02603

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007610.1_s300c1, BRDN0000392842
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GTF2A1L (11036)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11036 GTF2A1L general transcription facto... NM_006872.5 100% 100%
2 human 11036 GTF2A1L general transcription facto... NM_001193487.2 92.8% 92.8% 20_21ins102
3 human 286749 STON1-GTF2A1L STON1-GTF2A1L readthrough NM_172311.3 40.2% 40.1% (many diffs)
4 human 286749 STON1-GTF2A1L STON1-GTF2A1L readthrough NM_001198593.1 37.3% 36.9% (many diffs)
5 human 286749 STON1-GTF2A1L STON1-GTF2A1L readthrough NM_001198594.1 36.2% 36.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1500
ORF length:
1434
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CTGCCTCAAC CCGGTGCCTA AACTCTACAG ATCTGTAATT GAAGATGTAA
121TTGAAGGAGT TCGGAATCTA TTTGCTGAAG AAGGTATAGA GGAACAAGTT TTAAAAGACT
181TGAAGCAGCT CTGGGAAACC AAGGTTTTGC AGTCTAAAGC AACAGAAGAC TTCTTCAGAA
241ATAGCATCCA ATCACCTCTG TTTACTCTTC AGTTGCCGCA CAGCTTGCAC CAAACATTGC
301AATCGTCAAC AGCATCATTA GTTATTCCTG CTGGTAGAAC TCTTCCAAGT TTTACCACAG
361CAGAACTGGG CACTTCAAAC TCCAGTGCAA ACTTTACTTT TCCTGGTTAT CCCATTCATG
421TACCAGCAGG TGTGACACTA CAGACTGTAT CTGGTCACCT TTATAAAGTC AATGTACCAA
481TTATGGTGAC AGAGACTTCT GGAAGAGCAG GTATTCTTCA GCATCCAATT CAGCAAGTAT
541TTCAACAGCT TGGCCAGCCT TCAGTAATAC AAACTAGTGT TCCACAATTG AATCCATGGT
601CTCTTCAAGC AACTACTGAA AAATCACAGA GAATTGAAAC CGTGCTACAG CAACCCGCAA
661TTCTACCTTC TGGGCCAGTA GATAGGAAAC ACTTAGAAAA TGCCACCAGT GATATACTTG
721TATCTCCTGG AAATGAGCAT AAAATCGTGC CTGAAGCTTT GTTGTGTCAT CAGGAAAGTT
781CTCACTATAT CAGTCTTCCA GGTGTTGTAT TTTCTCCACA GGTCTCTCAA ACAAATTCTA
841ATGTGGAGTC AGTGCTCAGT GGTTCAGCTA GCATGGCTCA AAATCTGCAT GATGAGTCCC
901TCTCCACAAG CCCTCATGGG GCTCTCCACC AGCACGTGAC TGATATTCAG CTTCATATTC
961TTAAAAATAG GATGTATGGA TGTGATTCTG TAAAGCAACC AAGAAATATA GAGGAACCCA
1021GCAACATACC TGTATCAGAG AAGGATTCTA ATTCTCAGGT GGATTTAAGC ATTCGGGTTA
1081CTGATGATGA TATTGGTGAA ATAATTCAAG TAGATGGAAG CGGTGATACA TCTTCCAATG
1141AAGAAATAGG AAGTACAAGA GATGCAGATG AGAATGAATT TCTAGGGAAT ATTGACGGGG
1201GAGATCTGAA GGTACCTGAA GAAGAAGCTG ACAGTATTTC AAATGAGGAT TCAGCCACAA
1261ACAGTAGTGA TAATGAAGAC CCTCAAGTAA ACATTGTAGA AGAGGACCCT TTAAATTCTG
1321GAGATGATGT TAGTGAACAG GATGTGCCAG ACCTGTTTGA CACGGATAAT GTTATTGTCT
1381GTCAGTATGA TAAGATTCAT CGAAGCAAGA ACAAATGGAA ATTCTATTTG AAAGATGGTG
1441TTATGTGTTT TGGAGGGAGA GACTATGTAT TTGCAAAAGC CATTGGTGAT GCAGAGTGGT
1501ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca
1561acgaac

Download FASTA (ORF) (Full)