Construct: ORF ccsbBroadEn_02621
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012233.1_s300c1, BRDN0000388084
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PRDM7 (11105)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11105 | PRDM7 | PR/SET domain 7 | XM_017022884.1 | 54.6% | 38.8% | 1_81del;411_693del;878_939del |
| 2 | human | 11105 | PRDM7 | PR/SET domain 7 | XM_011522829.1 | 45.3% | 45.3% | 1_618del |
| 3 | human | 11105 | PRDM7 | PR/SET domain 7 | XM_017022882.1 | 40.8% | 29.2% | 1_399del;729_1011del;1196_1257del |
| 4 | human | 11105 | PRDM7 | PR/SET domain 7 | XM_017022883.1 | 40.8% | 29.2% | 1_399del;729_1011del;1196_1257del |
| 5 | human | 11105 | PRDM7 | PR/SET domain 7 | NM_001098173.1 | 34.7% | 24.9% | 1_618del;948_1230del;1415_1476del |
| 6 | human | 11105 | PRDM7 | PR/SET domain 7 | XM_005256274.3 | 34.7% | 24.9% | 1_618del;948_1230del;1415_1476del |
| 7 | human | 56979 | PRDM9 | PR/SET domain 9 | NM_001310214.1 | 18.5% | 13.8% | (many diffs) |
| 8 | human | 56979 | PRDM9 | PR/SET domain 9 | NM_020227.3 | 18.5% | 13.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 582
- ORF length:
- 513
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGTCAGAAC TTCTTCATTG ACAGCTGTGC TGCTCATGGG CCCCCTACAT 121 TTGTAAAGGA CAGTGCAGTG GACAAGGGGC ATCCCAACCG TTCAGCCCTC AGTCTGCCCC 181 CGGGGCTGAG AATTGGGCCA TCAGGCATCC CTCAGGCTGG GCTTGGAGTA TGGAACGAGG 241 CATCTGATCT GCCACTGGGT CTGCACTTTG GCCCCTATGA GGGCCGAATT ACAGAAGACG 301 AAGAGGCAGC CAACAGTGGA TATTCCTGGC TAATCACCAA GGGGAGAAAC TGCTATGAGT 361 ATGTGGATGG AAAAGATAAA TCCTCGGCCA ACTGGATGAG AACCAAAGCC AGAGATCCAT 421 CCATGTCCCT CATGCTGTCT GGCCTTTTCA AGTCAAAAAT TTCTCAGTCA ACATGTGGAA 481 CGCAATCACT CCTCTCAGAA CTTCCCAGGA CCATCTGCAA GAAAACTTCT CCAACCAGAG 541 AATCCCTGCC CAGGGGATCA GAATCAGGAG CGGCAATATT CTTGCCAACT TTCTTGTACA 601 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac