Construct: ORF ccsbBroadEn_02626
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015983.1_s300c1, BRDN0000387616
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PKIG (11142)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11142 | PKIG | cAMP-dependent protein kina... | NM_001281444.1 | 100% | 100% | |
| 2 | human | 11142 | PKIG | cAMP-dependent protein kina... | NM_001281445.2 | 100% | 100% | |
| 3 | human | 11142 | PKIG | cAMP-dependent protein kina... | NM_007066.5 | 100% | 100% | |
| 4 | human | 11142 | PKIG | cAMP-dependent protein kina... | NM_181804.2 | 100% | 100% | |
| 5 | human | 11142 | PKIG | cAMP-dependent protein kina... | NM_181805.2 | 100% | 100% | |
| 6 | human | 11142 | PKIG | cAMP-dependent protein kina... | XM_017027614.1 | 100% | 100% | |
| 7 | human | 11142 | PKIG | cAMP-dependent protein kina... | XM_017027615.1 | 100% | 100% | |
| 8 | human | 11142 | PKIG | cAMP-dependent protein kina... | XM_017027616.1 | 100% | 100% | |
| 9 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_001039390.2 | 88.1% | 90.7% | (many diffs) |
| 10 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_001039391.2 | 88.1% | 90.7% | (many diffs) |
| 11 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_001164053.1 | 88.1% | 90.7% | (many diffs) |
| 12 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_001164055.1 | 88.1% | 90.7% | (many diffs) |
| 13 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_011106.2 | 88.1% | 90.7% | (many diffs) |
| 14 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | XM_006498926.3 | 88.1% | 90.7% | (many diffs) |
| 15 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | XM_006498927.1 | 88.1% | 90.7% | (many diffs) |
| 16 | mouse | 18769 | Pkig | protein kinase inhibitor, g... | NM_001277096.1 | 86.8% | 89.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 297
- ORF length:
- 228
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GATGGAGGTC GAGTCCTCCT ACTCGGACTT CATCTCCTGT GACCGGACAG 121 GCCGTCGGAA TGCGGTCCCT GACATCCAGG GAGACTCAGA GGCTGTGAGC GTGAGGAAGC 181 TGGCTGGAGA CATGGGCGAG CTGGCACTCG AGGGGGCAGA AGGACAGGTG GAGGGAAGCG 241 CCCCAGACAA GGAAGCTGGC AACCAGCCCC AGAGCAGCGA TGGGACCACC TCGTCTTTGC 301 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 361 aac