Construct: ORF ccsbBroadEn_02671

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001463.1_s300c1, BRDN0000391783
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ECD (11319)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 11319 ECD ecdysoneless cell cycle reg... NM_007265.3 100% 100%
2 human 11319 ECD ecdysoneless cell cycle reg... NM_001135752.1 95.1% 95.1% 1126_1224del
3 human 11319 ECD ecdysoneless cell cycle reg... NM_001135753.1 93.3% 93.3% 782_783ins129
4 human 11319 ECD ecdysoneless cell cycle reg... NR_024203.1 77.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1998
ORF length:
1932
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGAAACCATG AAGCTTGCTA CGATGGAAGA CACAGTGGAG TACTGCCTGT
121TCCTGATACC AGATGAGTCA AGGGACTCAG ATAAACATAA AGAGATTCTT CAGAAGTACA
181TTGAGAGAAT AATCACTCGG TTTGCACCTA TGCTGGTCCC CTACATCTGG CAGAATCAGC
241CTTTCAATCT TAAATATAAA CCTGGGAAAG GAGGTGTTCC TGCTCATATG TTTGGCGTGA
301CAAAGTTTGG GGATAACATT GAGGATGAAT GGTTTATTGT TTATGTAATA AAGCAGATCA
361CAAAGGAATT TCCAGAGTTA GTAGCAAGGA TTGAAGACAA TGATGGTGAA TTCTTGTTAA
421TAGAAGCTGC TGACTTTCTC CCTAAATGGC TGGATCCTGA AAATAGCACC AATAGGGTAT
481TTTTCTGCCA TGGGGAATTG TGTATTATCC CTGCACCAAG AAAATCTGGA GCAGAATCTT
541GGTTACCCAC CACACCCCCA ACAATTCCAC AAGCATTGAA TATAATCACA GCACATTCAG
601AAAAAATACT TGCTTCAGAA TCTATACGAG CTGCTGTGAA TAGGCGCATC AGAGGGTACC
661CAGAAAAAAT TCAGGCCTCA CTTCATCGAG CACACTGCTT CCTTCCAGCT GGCATTGTGG
721CAGTGCTAAA GCAGCGCCCC AGATTGGTGG CTGCAGCAGT CCAGGCATTT TACCTACGAG
781ACCCTATTGA CCTGCGAGCT TGTCGTGTTT TCAAGACATT CTTGCCTGAA ACACGAATAA
841TGACATCGGT CACATTCACT AAATGTCTAT ATGCACAATT GGTGCAACAA AGGTTTGTGC
901CAGACCGGCG GAGTGGATAC AGGCTGCCTC CTCCATCTGA TCCCCAGTAC CGAGCCCATG
961AATTGGGCAT GAAATTGGCT CATGGATTTG AGATCTTATG CTCCAAATGT AGCCCACATT
1021TTTCTGACTG CAAGAAATCC CTTGTGACTG CCTCACCACT CTGGGCCAGT TTCCTTGAAA
1081GTCTGAAAAA GAATGATTAC TTTAAGGGAC TGATAGAAGG TTCTGCTCAG TACCGGGAAA
1141GGCTAGAAAT GGCAGAGAAT TACTTCCAGC TCTCAGTAGA CTGGCCAGAA AGTTCTCTTG
1201CTATGAGCCC TGGTGAAGAA ATCTTAACCT TATTACAGAC AATACCATTT GATATAGAAG
1261ACCTTAAGAA AGAAGCAGCT AATCTTCCCC CAGAGGATGA TGACCAGTGG TTAGATCTCT
1321CACCAGATCA GCTGGACCAG CTGCTGCAGG AAGCTGTTGG CAAAAAAGAA TCCGAGTCTG
1381TTTCCAAGGA GGAGAAGGAG CAGAACTATG ACTTAACTGA AGTCTCAGAG AGCATGAAAG
1441CTTTCATATC CAAAGTCTCA ACCCACAAGG GAGCAGAGCT GCCTCGAGAA CCTTCTGAGG
1501CTCCAATCAC TTTTGATGCA GATTCTTTTC TTAATTATTT TGATAAGATT TTAGGGCCAA
1561GGCCTAATGA GTCAGATTCT GATGATCTGG ATGATGAAGA CTTTGAATGT TTAGATAGTG
1621ATGATGACTT GGACTTTGAA ACACACGAAC CTGGCGAAGA GGCTTCCCTG AAAGGAACAC
1681TTGATAATCT CAAGTCATAC ATGGCCCAGA TGGACCAGGA ACTAGCACAC ACCTGCATCA
1741GCAAAAGTTT CACCACTAGG AACCAAGTGG AACCTGTATC CCAGACTACC GATAACAATT
1801CAGATGAGGA AGATTCTGGT ACGGGAGAAT CTGTTATGGC ACCAGTAGAT GTAGACCTGA
1861ACCTGGTTTC AAATATATTG GAATCCTATA GCTCCCAAGC TGGACTGGCA GGACCTGCTT
1921CCAATCTTTT ACAAAGCATG GGAGTGCAGC TGCCTGACAA CACCGATCAC AGACCAACAA
1981GTAAGCCAAC AAAAAATTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
2041gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)

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