Construct: ORF ccsbBroadEn_02684

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000952.1_s300c1, BRDN0000386435
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IKZF3 (22806)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22806 IKZF3 IKAROS family zinc finger 3 NM_012481.5 100% 100%
2 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257408.2 93.3% 93.3% 59_60ins102
3 human 22806 IKZF3 IKAROS family zinc finger 3 NM_183229.3 92.3% 92.3% 589_590ins117
4 human 22806 IKZF3 IKAROS family zinc finger 3 NM_183230.3 92.3% 92.3% 707_708ins117
5 human 22806 IKZF3 IKAROS family zinc finger 3 NM_183228.3 88.9% 88.9% 421_422ins168
6 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257409.2 85.6% 85.6% 59_60ins102;487_488ins117
7 human 22806 IKZF3 IKAROS family zinc finger 3 NM_183232.3 84.6% 84.6% 590_591ins234
8 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257410.2 82.9% 82.9% 162_163ins261
9 human 22806 IKZF3 IKAROS family zinc finger 3 NM_183231.3 81.3% 81.3% 420_421ins285
10 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257414.2 73.6% 73.6% 422_423ins402
11 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257411.2 71.9% 71.9% 162_163ins429
12 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257412.2 64.2% 64.2% 162_163ins546
13 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001257413.2 56.5% 56.5% 162_163ins663
14 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001284514.1 51.4% 51.4% 0_1ins741
15 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001284515.2 51.4% 51.4% 0_1ins741
16 human 22806 IKZF3 IKAROS family zinc finger 3 NM_001284516.1 51.4% 51.4% 0_1ins741
17 mouse 22780 Ikzf3 IKAROS family zinc finger 3 NM_011771.1 86.1% 86.6% (many diffs)
18 mouse 22780 Ikzf3 IKAROS family zinc finger 3 XM_006533204.4 83.3% 84% (many diffs)
19 mouse 22780 Ikzf3 IKAROS family zinc finger 3 XM_006533206.4 49.8% 48.6% (many diffs)
20 mouse 22780 Ikzf3 IKAROS family zinc finger 3 XM_006533205.4 49.3% 48.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1593
ORF length:
1527
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA AGATATACAA ACAAATGCGG AACTGAAAAG CACTCAGGAG CAGTCTGTGC
121CCGCAGAAAG TGCAGCGGTT TTGAATGACT ACAGTTTAAC CAAATCTCAT GAAATGGAAA
181ATGTGGACAG TGGAGAAGGC CCAGCCAATG AAGATGAAGA CATAGGAGAT GATTCAATGA
241AAGTGAAAGA TGAATACAGT GAAAGAGATG AGAATGTTTT AAAGTCAGAA CCCATGGGAA
301ATGCAGAAGA GCCTGAAATC CCTTACAGCT ATTCAAGAGA ATATAATGAA TATGAAAACA
361TTAAGTTGGA GAGACATGTT GTCTCATTCG ATAGTAGCAG GCCAACCAGT GGAAAGATGA
421ACTGCGATGT GTGTGGATTA TCCTGCATCA GCTTCAATGT CTTAATGGTT CATAAGCGAA
481GCCATACTGG TGAACGCCCA TTCCAGTGTA ATCAGTGTGG GGCATCTTTT ACTCAGAAAG
541GTAACCTCCT CCGCCACATT AAACTGCACA CAGGGGAAAA ACCTTTTAAG TGTCACCTCT
601GCAACTATGC ATGCCAAAGA AGAGATGCGC TCACGGGGCA TCTTAGGACA CATTCTGTGG
661AGAAACCCTA CAAATGTGAG TTTTGTGGAA GGAGTTACAA GCAGAGAAGT TCCCTTGAGG
721AGCACAAGGA GCGCTGCCGT ACATTTCTTC AGAGCACTGA CCCAGGGGAC ACTGCAAGTG
781CGGAGGCAAG ACACATCAAA GCAGAGATGG GAAGTGAAAG AGCTCTCGTA CTGGACAGAT
841TAGCAAGCAA TGTGGCAAAA CGAAAAAGCT CAATGCCTCA GAAATTCATT GGTGAGAAGC
901GCCACTGCTT TGATGTCAAC TATAATTCAA GTTACATGTA TGAGAAAGAG AGTGAGCTCA
961TACAGACCCG CATGATGGAC CAAGCCATCA ATAACGCCAT CAGCTATCTT GGCGCCGAAG
1021CCCTGCGCCC CTTGGTCCAG ACACCGCCTG CTCCCACCTC GGAGATGGTT CCAGTTATCA
1081GCAGCATGTA TCCCATAGCC CTCACCCGGG CTGAGATGTC AAACGGTGCC CCTCAAGAGC
1141TGGAAAAGAA AAGCATCCAC CTTCCAGAGA AGAGCGTGCC TTCTGAGAGA GGCCTCTCTC
1201CCAACAATAG TGGCCACGAC TCCACGGACA CTGACAGCAA CCATGAAGAA CGCCAGAATC
1261ACATCTATCA GCAAAATCAC ATGGTCCTGT CTCGGGCCCG CAATGGGATG CCACTTCTGA
1321AGGAGGTTCC CCGCTCTTAC GAACTCCTCA AGCCCCCGCC CATCTGCCCA AGAGACTCCG
1381TCAAAGTGAT CAACAAGGAA GGGGAGGTGA TGGATGTGTA TCGGTGTGAC CACTGCCGCG
1441TCCTCTTCCT GGACTATGTG ATGTTCACGA TTCACATGGG CTGCCACGGC TTCCGTGACC
1501CTTTCGAGTG TAACATGTGT GGATATCGAA GCCATGATCG GTATGAGTTC TCGTCTCACA
1561TAGCCAGAGG AGAACACAGA GCCCTGCTGA AGTGCCCAAC TTTCTTGTAC AAAGTtggca
1621ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)