Construct: ORF ccsbBroadEn_02687
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013567.1_s300c1, BRDN0000457251
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- COPG1 (22820)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22820 | COPG1 | COPI coat complex subunit g... | NM_016128.4 | 100% | 100% | |
| 2 | human | 22820 | COPG1 | COPI coat complex subunit g... | XM_011512549.2 | 60.6% | 58.1% | (many diffs) |
| 3 | mouse | 54161 | Copg1 | coatomer protein complex, s... | NM_017477.2 | 89.1% | 97.2% | (many diffs) |
| 4 | mouse | 54161 | Copg1 | coatomer protein complex, s... | XR_001785155.1 | 56.1% | (many diffs) | |
| 5 | mouse | 54161 | Copg1 | coatomer protein complex, s... | NM_201244.1 | 12.5% | 12.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2688
- ORF length:
- 2622
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTT GAAGAAATTC GACAAGAAGG ATGAGGAGTC AGGTGGAGGC TCCAACCCAT 121 TCCAGCACCT TGAGAAGAGT GCGGTACTCC AGGAGGCCCG TGTATTTAAT GAAACTCCCA 181 TCAACCCTCG GAAATGTGCC CACATCCTCA CCAAGATTCT TTATCTCATA AACCAGGGGG 241 AGCACCTGGG GACCACGGAA GCGACCGAGG CCTTCTTTGC CATGACCAAG CTCTTTCAGT 301 CCAATGATCC CACACTCCGT CGGATGTGCT ACTTGACCAT CAAGGAGATG TCTTGCATTG 361 CAGAGGATGT CATCATTGTC ACCAGCAGCC TAACAAAAGA CATGACTGGG AAAGAAGACA 421 ACTACCGGGG CCCGGCCGTG CGAGCCCTCT GCCAGATCAC TGATAGCACC ATGCTGCAGG 481 CTATTGAGCG CTACATGAAA CAAGCCATTG TGGACAAGGT GCCCAGTGTC TCCAGCTCTG 541 CCCTCGTGTC TTCCTTGCAC CTGCTGAAGT GCAGCTTTGA CGTGGTCAAG CGCTGGGTGA 601 ATGAGGCTCA GGAGGCAGCA TCCAGTGATA ACATCATGGT CCAGTACCAC GCACTAGGGC 661 TCCTGTACCA TGTGCGTAAG AATGACCGCC TAGCCGTCAA TAAGATGATC AGCAAGGTCA 721 CACGGCATGG CCTTAAGTCT CCCTTTGCCT ACTGCATGAT GATCCGGGTG GCCAGCAAGC 781 AGCTGGAAGA GGAGGATGGC AGCCGTGACA GCCCACTGTT TGACTTCATC GAGAGCTGCT 841 TGCGCAACAA GCACGAGATG GTGGTGTATG AAGCCGCCTC GGCCATCGTC AATCTGCCAG 901 GCTGCAGTGC CAAAGAGCTG GCCCCGGCTG TGTCAGTGCT CCAGCTTTTC TGCAGCTCAC 961 CCAAGGCTGC TCTCCGCTAT GCTGCTGTTC GTACCCTCAA TAAGGTTGCC ATGAAGCATC 1021 CGTCAGCTGT GACAGCTTGT AATCTGGATC TGGAGAACCT GGTCACAGAT TCAAACCGCA 1081 GCATTGCCAC GCTGGCCATC ACCACCCTCC TTAAGACGGG CAGCGAGAGC AGCATCGACC 1141 GCCTCATGAA GCAGATCTCC TCCTTCATGT CAGAAATCTC GGATGAATTC AAGGTGGTGG 1201 TTGTCCAGGC CATCAGTGCC CTGTGTCAGA AATATCCTCG CAAACACGCC GTCCTTATGA 1261 ACTTCCTGTT CACCATGCTG CGGGAAGAGG GTGGCTTTGA GTATAAGCGC GCTATCGTGG 1321 ACTGCATCAT CAGCATCATT GAAGAGAACT CAGAGAGCAA GGAGACAGGG CTGTCACATC 1381 TGTGCGAGTT CATCGAGGAC TGCGAGTTCA CAGTGCTGGC CACCCGTATT CTACATCTCC 1441 TGGGCCAGGA GGGGCCCAAG ACCACCAATC CCTCAAAGTA CATCCGCTTC ATCTATAACC 1501 GAGTGGTCTT GGAGCATGAG GAGGTCCGGG CAGGTGCTGT GAGTGCTCTG GCGAAGTTTG 1561 GAGCCCAGAA TGAAGAGATG TTACCCAGTA TCTTGGTGTT GCTGAAGAGG TGTGTGATGG 1621 ATGATGACAA TGAAGTAAGG GACCGAGCCA CCTTCTACCT AAATGTCCTG GAGCAGAAGC 1681 AGAAGGCCCT TAATGCAGGC TATATCCTAA ATGGTCTGAC TGTGTCCATC CCTGGTCTGG 1741 AGAGGGCTCT GCAGCAGTAC ACTCTAGAAC CATCAGAAAA ACCTTTTGAC CTCAAGTCTG 1801 TGCCCCTGGC CACGGCGCCC ATGGCAGAGC AGAGAACAGA AAGTACCCCC ATCACAGCAG 1861 TCAAACAGCC TGAGAAAGTG GCAGCTACCA GGCAGGAGAT CTTCCAGGAG CAGTTGGCAG 1921 CAGTGCCAGA GTTCCGCGGT CTTGGGCCCC TCTTCAAGTC CTCGCCTGAG CCCGTGGCCC 1981 TCACCGAGTC AGAGACGGAG TATGTCATCC GCTGCACCAA ACACACCTTC ACCAACCACA 2041 TGGTTTTTCA GTTTGACTGC ACAAACACAC TCAATGACCA GACCTTGGAG AATGTCACAG 2101 TGCAGATGGA GCCCACTGAG GCCTATGAGG TGCTCTGTTA CGTGCCTGCC CGGAGCCTGC 2161 CCTACAACCA GCCCGGGACC TGCTACACAC TGGTGGCACT GCCCAAAGAA GACCCCACAG 2221 CTGTGGCCTG CACATTCAGC TGCATGATGA AGTTCACTGT CAAGGACTGT GATCCCACCA 2281 CTGGGGAGAC TGATGACGAA GGCTATGAGG ATGAGTATGT GCTGGAAGAT CTGGAAGTTA 2341 CTGTAGCTGA TCACATTCAA AAGGTCATGA AACTGAACTT CGAAGCAGCC TGGGATGAGG 2401 TAGGGGATGA ATTTGAGAAG GAGGAAACGT TCACCTTGTC TACCATCAAG ACACTTGAAG 2461 AGGCTGTGGG TAATATTGTG AAGTTCTTGG GAATGCACCC TTGTGAGAGG TCAGACAAAG 2521 TGCCGGATAA CAAGAACACC CACACGTTGC TCCTGGCTGG TGTGTTCCGG GGTGGTCATG 2581 ACATCCTGGT GCGCTCCCGG CTGCTGCTTT TGGACACAGT GACAATGCAG GTGACAGCCA 2641 GAAGTTTGGA GGAGCTGCCA GTAGACATCA TCTTGGCATC TGTGGGATAC CCAACTTTCT 2701 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac