Construct: ORF ccsbBroadEn_02724

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002093.1_s300c1, BRDN0000385252
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SEPTIN6 (23157)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23157 SEPTIN6 septin 6 NM_145802.4 100% 100%
2 human 23157 SEPTIN6 septin 6 NM_145799.4 99.4% 99.5% 1281_1281delTinsCTTTTTT
3 human 23157 SEPTIN6 septin 6 NM_145800.4 99.4% 99.5% 1281_1281delTinsCTTTTTT
4 human 23157 SEPTIN6 septin 6 XM_006724750.3 99.4% 99.5% 1281_1281delTinsCTTTTTT
5 human 23157 SEPTIN6 septin 6 XM_006724748.3 98.9% 99% 1280_1281insCTTT;1284_1293delGGGCTTCCTG
6 human 23157 SEPTIN6 septin 6 NM_015129.6 98.6% 98.3% (many diffs)
7 human 23157 SEPTIN6 septin 6 XM_011531318.3 91.4% 91% 1283C>T;1286_1289delACTG;1292_1407del
8 human 23157 SEPTIN6 septin 6 XM_005262400.4 87.3% 86.9% 1283C>T;1286_1289delACTG;1292_1473del
9 human 23157 SEPTIN6 septin 6 XM_011531317.3 81.4% 81.1% 1283C>T;1286_1289delACTG;1292_1578del
10 human 23157 SEPTIN6 septin 6 XR_001755677.2 46.7% 1_91del;877_878ins169;1210_2221del
11 human 23157 SEPTIN6 septin 6 XR_001755676.2 25.1% (many diffs)
12 human 23157 SEPTIN6 septin 6 XR_001755675.2 19.4% (many diffs)
13 mouse 56526 Sept6 septin 6 NM_019942.5 91.3% 96.2% (many diffs)
14 mouse 56526 Sept6 septin 6 NM_001177323.2 91% 96% (many diffs)
15 mouse 56526 Sept6 septin 6 NM_001253706.1 90.7% 95.8% (many diffs)
16 mouse 56526 Sept6 septin 6 XM_006541389.3 90.7% 95.8% (many diffs)
17 mouse 56526 Sept6 septin 6 XM_006541390.2 90.7% 95.8% (many diffs)
18 mouse 56526 Sept6 septin 6 XM_006541388.2 90.2% 95.3% (many diffs)
19 mouse 56526 Sept6 septin 6 NM_001177324.1 90% 94.7% (many diffs)
20 mouse 56526 Sept6 septin 6 XM_017318580.1 89.4% 94.4% (many diffs)
21 mouse 56526 Sept6 septin 6 XM_017318581.1 88.8% 93.9% (many diffs)
22 mouse 56526 Sept6 septin 6 XM_006541391.2 88.1% 92.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1353
ORF length:
1287
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGCGACCGAT ATAGCTCGCC AGGTGGGTGA AGGTTGCCGA ACTGTCCCCC
121TGGCTGGACA TGTGGGGTTT GACAGCTTGC CTGACCAGCT GGTGAATAAG TCCGTCAGCC
181AGGGCTTCTG CTTCAACATC CTGTGCGTGG GAGAGACAGG TTTGGGCAAG TCCACCCTCA
241TGGACACCCT GTTCAACACC AAATTCGAAG GGGAGCCAGC CACCCACACA CAGCCGGGTG
301TCCAGCTCCA GTCTAATACC TATGACCTCC AAGAGAGCAA CGTGAGGCTA AAGCTCACGA
361TCGTTAGCAC AGTTGGCTTT GGGGACCAGA TCAACAAAGA GGACAGCTAC AAGCCTATCG
421TGGAATTCAT CGATGCACAA TTCGAGGCCT ACCTGCAGGA AGAGCTAAAG ATCCGAAGAG
481TGCTACACAC CTACCATGAC TCCCGAATCC ATGTCTGCTT GTATTTCATT GCCCCCACGG
541GTCATTCCCT GAAGTCTCTG GACCTAGTGA CTATGAAGAA GCTGGACAGT AAGGTGAACA
601TCATCCCCAT CATTGCCAAA GCAGATGCCA TTTCGAAGAG TGAGCTAACA AAGTTCAAAA
661TCAAAATCAC CAGCGAGCTT GTCAGCAACG GAGTCCAGAT CTATCAGTTT CCTACAGATG
721ATGAGTCGGT GGCAGAGATC AATGGAACCA TGAACGCCCA CCTGCCGTTT GCTGTCATTG
781GCAGCACAGA AGAACTGAAG ATAGGCAACA AGATGATGAG GGCGCGGCAG TATCCTTGGG
841GCACTGTGCA GGTTGAAAAC GAGGCCCACT GCGACTTTGT GAAGCTGCGG GAGATGCTGA
901TTCGGGTCAA CATGGAGGAT CTGCGGGAGC AGACCCACAC CCGGCACTAT GAGCTGTATC
961GCCGCTGTAA GCTGGAGGAG ATGGGCTTCA AGGACACCGA CCCTGACAGC AAACCCTTCA
1021GTTTACAGGA GACATATGAG GCCAAAAGGA ACGAGTTCCT AGGGGAACTC CAGAAAAAAG
1081AAGAGGAGAT GAGACAGATG TTCGTCCAGC GAGTCAAAGA GAAAGAAGCG GAGCTCAAAG
1141AGGCAGAGAA AGAGCTGCAC GAGAAGTTTG ACCGTCTGAA GAAACTGCAC CAGGACGAGA
1201AGAAGAAACT GGAGGATAAG AAGAAATCCC TGGATGATGA AGTGAATGCT TTCAAGCAAA
1261GAAAGACGGC GGCTGAGCTG CTCCAGTCCC AGGGCTCCCA GGCTGGAGGC TCACAGACTC
1321TGAAGAGAGA CAAAGAGAAG AAAAACTTTT TTTACCCAAC TTTCTTGTAC AAAGTtggca
1381ttataagaaa gcattgctta tcaatttgtt gcaacgaac

Download FASTA (ORF) (Full)